RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 LRRC23Q53EV4 343 aaPredicted RBP11.05□□□□□ -0.64
DDX55-210ENST00000543016 PGM2L1Q6PCE3 622 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 ENPP6Q6UWR7 440 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 CBLL1Q75N03 491 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 RANBP3LQ86VV4 465 aaPredicted RBP11.05□□□□□ -0.64
DDX55-210ENST00000543016 CLIP4Q8N3C7 705 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 RNF148Q8N7C7 305 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 GALNT11Q8NCW6 608 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 ZNF563Q8TA94 476 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 MCUR1Q96AQ8 359 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 ASB9Q96DX5 294 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 NSMCE2Q96MF7 247 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 TRIM15Q9C019 465 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 TRIM2Q9C040 744 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 POLR2J2Q9GZM3 115 aaKnown RBP11.05□□□□□ -0.64
DDX55-210ENST00000543016 POLR2J3Q9H1A7 115 aaKnown RBP11.05□□□□□ -0.64
DDX55-210ENST00000543016 DEFB127Q9H1M4 99 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 EXO5Q9H790 373 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 ACER3Q9NUN7 267 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 RLIMQ9NVW2 624 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 TESQ9UGI8 421 aaKnown RBP11.05□□□□□ -0.64
DDX55-210ENST00000543016 USP22Q9UPT9 525 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 CHST2Q9Y4C5 530 aa11.05□□□□□ -0.64
DDX55-210ENST00000543016 CHD6Q8TD26 2715 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 ATMQ13315 3056 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 BCKDKO14874 412 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 OIP5O43482 229 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 C1QL1O75973 258 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 GP1BBP13224 206 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 PRKCAP17252 672 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 TCN1P20061 433 aaPredicted RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 APOBEC1P41238 236 aaKnown RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 ACAA2P42765 397 aaKnown RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 SLC1A3P43003 542 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 CRYBA2P53672 197 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 NCALDP61601 193 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 KCNC4Q03721 635 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 QPRTQ15274 297 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 NRF1Q16656 503 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 WBP2NLQ6ICG8 309 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 GFRALQ6UXV0 394 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 GRINAQ7Z429 371 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 HMGN2P46Q86SG4 172 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 YRDCQ86U90 279 aaKnown RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 ATCAYQ86WG3 371 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 LSMEM1Q8N8F7 131 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 SMYD1Q8NB12 490 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 SFXN2Q96NB2 322 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 ARHGDIGQ99819 225 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 ZNF559Q9BR84 538 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 C12orf10Q9HB07 376 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 SERINC1Q9NRX5 453 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 DCAF13Q9NV06 445 aaKnown RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 EGFL7Q9UHF1 273 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 SPIN1Q9Y657 262 aaPredicted RBP11.04□□□□□ -0.64
DDX55-210ENST00000543016 AP4B1Q9Y6B7 739 aa11.04□□□□□ -0.64
DDX55-210ENST00000543016 SVILO95425 2214 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 GJE1A6NN92 205 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 B4DXG7 233 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 ARPC2O15144 300 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 TPST1O60507 370 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 CDC40O60508 579 aaKnown RBP eCLIP11.03□□□□□ -0.64
DDX55-210ENST00000543016 NTN1O95631 604 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 SERPINA1P01009 418 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 OPN1SWP03999 348 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 HOXD4P09016 255 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 CELA3AP09093 270 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PEPDP12955 493 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 HOXB1P14653 301 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 IFNA8P32881 189 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 RYKP34925 604 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PTGS2P35354 604 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PTGER4P35408 488 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 IDH2P48735 452 aaKnown RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 CLK1P49759 484 aaKnown RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 GFRA1P56159 465 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 SESN3P58005 492 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 B3GALT5-AS1P59052 145 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PLAURQ03405 335 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 TLE1Q04724 770 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 NDUFAF6Q330K2 333 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 IFI44LQ53G44 452 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PRR30Q53SZ7 412 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 WIPI1Q5MNZ9 446 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 SWT1Q5T5J6 900 aaKnown RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 RAET1LQ5VY80 246 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 VASNQ6EMK4 673 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 LCN8Q6JVE9 175 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 ARSKQ6UWY0 536 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PRICKLE2Q7Z3G6 844 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 DHFR2Q86XF0 187 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 PM20D2Q8IYS1 436 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 FAM156AQ8NDB6 213 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 GPR32P1Q8NGA4 272 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 SLC25A43Q8WUT9 341 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 DNAJA4Q8WW22 397 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 GEMIN6Q8WXD5 167 aaKnown RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 ABTB1Q969K4 478 aaPredicted RBP11.03□□□□□ -0.64
DDX55-210ENST00000543016 MIB2Q96AX9 1013 aa11.03□□□□□ -0.64
DDX55-210ENST00000543016 CADM1Q9BY67 442 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms