RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 IRX1P78414 480 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 ITGADQ13349 1161 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 PTGR1Q14914 329 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 P2RY6Q15077 328 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 UGT3A2Q3SY77 523 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 PDSS1Q5T2R2 415 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 Q6ZT83 130 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 DTX2Q86UW9 622 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 TDRPQ86YL5 185 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 HIPK1Q86Z02 1210 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 C4orf33Q8N1A6 199 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 OR5D16Q8NGK9 328 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 RFWD2Q8NHY2 731 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 HSD17B8Q92506 261 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 DNAJA3Q96EY1 480 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 TRMT61AQ96FX7 289 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 STACQ99469 402 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 HDHD5Q9BXW7 423 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 FANCFQ9NPI8 374 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 DUSP22Q9NRW4 184 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 ATP6V1HQ9UI12 483 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 B3GALT5Q9Y2C3 310 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 SNX8Q9Y5X2 465 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 ACTL7BQ9Y614 415 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 SMIM23A6NLE4 172 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 PIP5K1BO14986 540 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 SSX4O60224 188 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 IGHV3-9P01782 118 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 COX5AP20674 150 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 LCN1P31025 176 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 NTF4P34130 210 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 CRHR1P34998 444 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 CDH11P55287 796 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 FOXG1P55316 489 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 TP53BP2Q13625 1128 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 MLC1Q15049 377 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 PPA1Q15181 289 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 QPRTQ15274 297 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 ETFDHQ16134 617 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 GTF2IRD2BQ6EKJ0 949 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 C11orf71Q6IPW1 123 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 ZCCHC12Q6PEW1 402 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 B3GLCTQ6Y288 498 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 RNF165Q6ZSG1 346 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 GTF2IRD2Q86UP8 949 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 CLEC4FQ8N1N0 589 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 KRTCAP2Q8N6L1 136 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 ZNF614Q8N883 585 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 OR5AK3PQ8NH89 298 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 EPS8L3Q8TE67 593 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 TWIST2Q8WVJ9 160 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 REXO5Q96IC2 774 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 C3orf30Q96M34 536 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 C1orf50Q9BV19 199 aa13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 CISD1Q9NZ45 108 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 GPC6Q9Y625 555 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-213ENST00000541953 NBEAL1Q6ZS30 2694 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 A0A1W2PR80 420 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 E7EQL1 145 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 H3BQF6 201 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 ABCD4O14678 606 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 C6orf47O95873 294 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 PABPC4LP0CB38 370 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 NEFHP12036 1026 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 CCR4P51679 360 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 RASGEF1BQ0VAM2 473 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 SELENBP1Q13228 472 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 CCDC153Q494R4 210 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 SLC25A53Q5H9E4 307 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 PDZK1Q5T2W1 519 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 DNAJC14Q6Y2X3 702 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 MTERF4Q7Z6M4 381 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 TMCO5AQ8N6Q1 288 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 CCDC63Q8NA47 563 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 PSMA8Q8TAA3 256 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 AGR3Q8TD06 166 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 RHOXF2Q9BQY4 288 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 MECRQ9BV79 373 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 ACTRT3Q9BYD9 372 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 GP6Q9HCN6 339 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 TIGARQ9NQ88 270 aa13.65□□□□□ -0.22
CLSTN3-213ENST00000541953 KIF2AO00139 706 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 ETV2O00321 342 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 TLX2O43763 284 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 CYTIPO60759 359 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 TP53P04637 393 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 FESP07332 822 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 ATP6V1C1P21283 382 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 SLC7A1P30825 629 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 CCT3P49368 545 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 ATP12AP54707 1039 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 SUMO3P55854 103 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 RAC3P60763 192 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 SRSF2Q01130 221 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 PLAURQ03405 335 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 SKP2Q13309 424 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 TIGD2Q4W5G0 525 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 C6orf52Q5T4I8 152 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 DDIASQ8IXT1 998 aa13.64□□□□□ -0.23
CLSTN3-213ENST00000541953 MNS1Q8NEH6 495 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms