RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 LILRA2Q8N149 483 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ATP6V1C2Q8NEY4 427 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF563Q8TA94 476 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TSPEARQ8WU66 669 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 WDR60Q8WVS4 1066 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 CNOT9Q92600 299 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF524Q96C55 264 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 INTS12Q96CB8 462 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TMEM19Q96HH6 336 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF845Q96IR2 970 aaPredicted RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 MRGPRX4Q96LA9 322 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 UCN2Q96RP3 112 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TM9SF2Q99805 663 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TREX2Q9BQ50 279 aaPredicted RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PINK1Q9BXM7 581 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 FAM107BQ9H098 131 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 A4GALTQ9NPC4 353 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 SAR1AQ9NR31 198 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 MRGBPQ9NV56 204 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 RLIMQ9NVW2 624 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 GPC6Q9Y625 555 aaPredicted RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PTPN13Q12923 2485 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 MED12Q93074 2177 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 TRBV5-3A0A0A0MS03 114 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CYSRT1A8MQ03 144 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 EVPLLA8MZ36 301 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 EEF1E1-BLOC1S5C9J1V9 151 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 C5orf58C9J3I9 102 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 DVL2O14641 736 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 EEF1E1O43324 174 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 RCBTB2O95199 551 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 DBIP07108 87 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 BMP2P12643 396 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 COX6B1P14854 86 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 RPS4Y1P22090 263 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CTSSP25774 331 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 ELK4P28324 431 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 ADH6P28332 368 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 SHC1P29353 583 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 SEC24CP53992 1094 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 GYS2P54840 703 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 SESN3P58005 492 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 PLAURQ03405 335 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 TFF3Q07654 80 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 FOXF2Q12947 444 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 KLF10Q13118 480 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CTU2Q2VPK5 515 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 SLC25A35Q3KQZ1 300 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 LIN52Q52LA3 116 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 GCNT6Q5T4J0 391 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 MRPL2Q5T653 305 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 POMZP3Q6PJE2 187 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 VRK2Q86Y07 508 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CMIPQ8IY22 773 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 C10orf111Q8N326 155 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 DPP10Q8N608 796 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 METTL25Q8N6Q8 603 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 RELL2Q8NC24 303 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 FAM71CQ8NEG0 241 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 OR52P1PQ8NH57 321 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 OR10D3Q8NH80 312 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 OR2V1Q8NHB1 315 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 NFKBIDQ8NI38 313 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 FNDC9Q8TBE3 224 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 C10orf82Q8WW14 230 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 TMEM234Q8WY98 164 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 FIG4Q92562 907 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 PMM1Q92871 262 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 KLHL15Q96M94 604 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 KCNK17Q96T54 332 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CGREF1Q99674 301 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CPPED1Q9BRF8 314 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 TRIM8Q9BZR9 551 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 IKZF5Q9H5V7 419 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CACYBPQ9HB71 228 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 EXOSC3Q9NQT5 275 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 NPDC1Q9NQX5 325 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF629Q9UEG4 869 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF232Q9UNY5 417 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 CORO2BQ9UQ03 480 aa8.3□□□□□ -1.08
SNHG1-215ENST00000540904 SPTAN1Q13813 2472 aaKnown RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 NCOA6Q14686 2063 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-215ENST00000540904 DSPPQ9NZW4 1301 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 SPTBN1Q01082 2364 aaKnown RBP8.29□□□□□ -1.08
SNHG1-215ENST00000540904 FREM3P0C091 2139 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 A0A0G2JPF8 293 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 A0A0J9YW62 118 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 LOC100653049A0A140TA62 436 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 CFAP73A6NFT4 308 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 GJE1A6NN92 205 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 HNRNPCL2B2RXH8 293 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 HNRNPCL3B7ZW38 293 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 FBP2O00757 339 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 ADAMDEC1O15204 470 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 HNRNPRO43390 633 aaKnown RBP8.29□□□□□ -1.08
SNHG1-215ENST00000540904 EFNA2O43921 213 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 CXCL13O43927 109 aa8.29□□□□□ -1.08
SNHG1-215ENST00000540904 HNRNPCL1O60812 293 aaKnown RBP8.29□□□□□ -1.08
SNHG1-215ENST00000540904 DNAJA2O60884 412 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms