RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 IFNEQ86WN2 208 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 MISPQ8IVT2 679 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 ULK2Q8IYT8 1036 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 GTPBP8Q8N3Z3 284 aaPredicted RBP11.81□□□□□ -0.52
CHFR-216ENST00000538235 RNF148Q8N7C7 305 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 SMYD1Q8NB12 490 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 ZNF527Q8NB42 609 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 FAM156AQ8NDB6 213 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 HIPK4Q8NE63 616 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 OR5W2Q8NH69 310 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 ADGRG7Q96K78 797 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 SFXN2Q96NB2 322 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 LDAHQ9H6V9 325 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 MTHFD2LQ9H903 347 aaPredicted RBP11.81□□□□□ -0.52
CHFR-216ENST00000538235 SDHAF3Q9NRP4 125 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 MRGBPQ9NV56 204 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 PTPN13Q12923 2485 aa11.81□□□□□ -0.52
CHFR-216ENST00000538235 ICE1Q9Y2F5 2266 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 C7orf72A4D263 438 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 PRORSD1PA6NEY8 169 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 H3BML4 177 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 LRRTM2O43300 516 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 UBOX5O94941 541 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 LDLRP01130 860 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 NPPAP01160 153 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 THBS1P07996 1170 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 ETS2P15036 469 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 RYKP34925 604 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 DLX5P56178 289 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 LIPEQ05469 1076 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 EPS8Q12929 822 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 GANABQ14697 944 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 KRT72Q14CN4 511 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 DUSP7Q16829 419 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 LIN52Q52LA3 116 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 SLC25A53Q5H9E4 307 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 DHRS4L2Q6PKH6 230 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 EIF3MQ7L2H7 374 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 ADGRE4PQ86SQ3 457 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 RBM45Q8IUH3 476 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 PCYOX1LQ8NBM8 494 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 C11orf65Q8NCR3 313 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 NAXEQ8NCW5 288 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 RBM15BQ8NDT2 890 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 OR10Q1Q8NGQ4 319 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 ABTB1Q969K4 478 aaPredicted RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 CCDC120Q96HB5 630 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 REXO5Q96IC2 774 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 ZNF845Q96IR2 970 aaPredicted RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 TUBA1CQ9BQE3 449 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 SPATA9Q9BWV2 254 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 RASSF4Q9H2L5 321 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 EXO5Q9H790 373 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 COQ10BQ9H8M1 238 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 EXOSC3Q9NQT5 275 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 TMEM181Q9P2C4 612 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 CORO2BQ9UQ03 480 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 SLC35A3Q9Y2D2 325 aa11.8□□□□□ -0.52
CHFR-216ENST00000538235 SPTAN1Q13813 2472 aaKnown RBP11.8□□□□□ -0.52
CHFR-216ENST00000538235 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 OR14I1A6ND48 311 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 M0QX08 132 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 M0R3H8 397 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 GTPBP1O00178 669 aaKnown RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 PEPDP12955 493 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 NCK1P16333 377 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 IL7RP16871 459 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 ZNF17P17021 662 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 MSX1P28360 303 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 CLK3P49761 638 aaKnown RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 SUMO3P55854 103 aaPredicted RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 NUP107P57740 925 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 SESN3P58005 492 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 RBBP4Q09028 425 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 CEACAM7Q14002 265 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 ACSF3Q4G176 576 aaPredicted RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 C4orf17Q53FE4 359 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 ZNF311Q5JNZ3 666 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 ZNF585AQ6P3V2 769 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 RPTNQ6XPR3 784 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 PLEKHM3Q6ZWE6 761 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 CCDC80Q76M96 950 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 GRAMD2AQ8IUY3 354 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 PEX5LQ8IYB4 626 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 UBQLNLQ8IYU4 475 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 MICU2Q8IYU8 434 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 OIT3Q8WWZ8 545 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 SMPDL3BQ92485 455 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 CMTM5Q96DZ9 223 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 DNAJA3Q96EY1 480 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 EFCAB1Q9HAE3 211 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 GID8Q9NWU2 228 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 THUMPD1Q9NXG2 353 aaKnown RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 CALML5Q9NZT1 146 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 ANGPT4Q9Y264 503 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 MEMO1Q9Y316 297 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 SPTBN1Q01082 2364 aaKnown RBP11.79□□□□□ -0.52
CHFR-216ENST00000538235 FREM1Q5H8C1 2179 aa11.79□□□□□ -0.52
CHFR-216ENST00000538235 USP9YO00507 2555 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms