RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FCGR2AP12318 317 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 SFTPDP35247 375 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 IDH3AP50213 366 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 CCR4P51679 360 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 POLR2JP52435 117 aaKnown RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 PPP2R2AP63151 447 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 CHRNEQ04844 493 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 CBFBQ13951 182 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 FGFBP1Q14512 234 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 QPRTQ15274 297 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 SYPL1Q16563 259 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 GPAT3Q53EU6 434 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 SLC25A53Q5H9E4 307 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 HBMQ6B0K9 141 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 PPP4R4Q6NUP7 873 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 DNAJC14Q6Y2X3 702 aaPredicted RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 EIF3MQ7L2H7 374 aaKnown RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 HMGN2P46Q86SG4 172 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 MIER2Q8N344 545 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 GOLGA6L1Q8N7Z2 621 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 ANKFN1Q8N957 763 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 ZFP90Q8TF47 636 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 DYDC1Q8WWB3 177 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 OIT3Q8WWZ8 545 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 MRGPRX4Q96LA9 322 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 KLHL15Q96M94 604 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 EBF4Q9BQW3 602 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 THUMPD3Q9BV44 507 aaKnown RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 PRRG4Q9BZD6 226 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 OPN3Q9H1Y3 402 aaPredicted RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 TCF7L2Q9NQB0 619 aa13.26□□□□□ -0.29
USP28-204ENST00000537642 INTS9Q9NV88 658 aaKnown RBP13.26□□□□□ -0.29
USP28-204ENST00000537642 OTOGQ6ZRI0 2925 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 FAM234BA2RU67 622 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 A6NNC1 897 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 POLR3GO15318 223 aaPredicted RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 SASH3O75995 380 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 KRT75O95678 551 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 CHRM4P08173 479 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 UBTFL6P0CB48 400 aaPredicted RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 EPXP11678 715 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 NID1P14543 1247 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 CPOXP36551 454 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 PGM1P36871 562 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 MRPL19P49406 292 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 MVDP53602 400 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 TXNL4AP83876 142 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 PLAURQ03405 335 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 DAZAP2Q15038 168 aaPredicted RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 GTDC1Q4AE62 458 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 TIGD2Q4W5G0 525 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 PDSS1Q5T2R2 415 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 ZNF474Q6S9Z5 364 aaPredicted RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 MSANTD1Q6ZTZ1 278 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 CDH24Q86UP0 819 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 FAM71CQ8NEG0 241 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 OSTF1Q92882 214 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 VPS33AQ96AX1 596 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 ITCHQ96J02 903 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 TRNT1Q96Q11 434 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 GPATCH1Q9BRR8 931 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 QRSL1Q9H0R6 528 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 SLC38A1Q9H2H9 487 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 MCTS1Q9ULC4 181 aaKnown RBP13.25□□□□□ -0.29
USP28-204ENST00000537642 CLEC4AQ9UMR7 237 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 LIPT1Q9Y234 373 aa13.25□□□□□ -0.29
USP28-204ENST00000537642 CLDN24A6NM45 220 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 SYNGR4O95473 234 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 ZCCHC18P0CG32 403 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 CD8BP10966 210 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 ANXA11P50995 505 aaKnown RBP13.24□□□□□ -0.29
USP28-204ENST00000537642 AQP5P55064 265 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 CARD18P57730 90 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 HPCAP84074 193 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 FAM27E3Q08E93 113 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 SELENBP1Q13228 472 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 MAPK11Q15759 364 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 TMEM176BQ3YBM2 270 aaPredicted RBP13.24□□□□□ -0.29
USP28-204ENST00000537642 LRRC74BQ6ZQY2 392 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 FAM214BQ7L5A3 538 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 ZNF610Q8N9Z0 462 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 ATP6V1C2Q8NEY4 427 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 CKAP2Q8WWK9 683 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 NRGNQ92686 78 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 CCDC28BQ9BUN5 200 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 SRXN1Q9BYN0 137 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 RMND5AQ9H871 391 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 COQ10BQ9H8M1 238 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 RASSF1Q9NS23 344 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.24□□□□□ -0.29
USP28-204ENST00000537642 DNAJB12Q9NXW2 375 aaKnown RBP13.24□□□□□ -0.29
USP28-204ENST00000537642 SLC35A3Q9Y2D2 325 aa13.24□□□□□ -0.29
USP28-204ENST00000537642 SS18L1O75177 396 aaPredicted RBP13.23□□□□□ -0.29
USP28-204ENST00000537642 ANP32DO95626 131 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 NR2F1P10589 423 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ETFAP13804 333 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 PGCP20142 388 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 MAGEA8P43361 318 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 PCYT1AP49585 367 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 SESN3P58005 492 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms