RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 FXYD6Q9H0Q3 95 aa13.02□□□□□ -0.33
LIG1-203ENST00000536218 SPHK1Q9NYA1 384 aa13.02□□□□□ -0.33
LIG1-203ENST00000536218 USP34Q70CQ2 3546 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3DA0A087WVF3 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3IA0A087WXS9 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3EA0A087X179 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3KA0A087X1G2 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3FA6NER0 549 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3LB9A6J9 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 PIP5K1CO60331 668 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3HP0C7X1 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 LAMP2P13473 410 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 PTAFRP25105 342 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 PTBP1P26599 531 aaKnown RBP eCLIP13.01□□□□□ -0.337e-7■■■■□ 23
LIG1-203ENST00000536218 SOAT1P35610 550 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 MVDP53602 400 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 HTR4Q13639 388 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 KRT33BQ14525 404 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TSC22D1Q15714 1073 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3GQ6DHY5 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3CQ6IPX1 549 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 LRRN1Q6UXK5 716 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 NUDT18Q6ZVK8 323 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 FGD2Q7Z6J4 655 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 DCUN1D3Q8IWE4 304 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TBC1D3Q8IZP1 549 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 FBXO15Q8NCQ5 510 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 BPIFCQ8NFQ6 507 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 HMGB4Q8WW32 186 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 LRR1Q96L50 414 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 TRPV4Q9HBA0 871 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 PRMT8Q9NR22 394 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 C14orf105Q9NVL8 296 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 C5AR2Q9P296 337 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 RNF215Q9Y6U7 377 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 OR52A4PA6NMU1 304 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 DPM1O60762 260 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 GCM2O75603 506 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 PEPDP12955 493 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 ETFAP13804 333 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 GABRA5P31644 462 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 OC90Q02509 493 aaPredicted RBP13.01□□□□□ -0.33
LIG1-203ENST00000536218 LRRC74AQ0VAA2 488 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 COX20Q5RI15 118 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 OR5M10Q6IEU7 315 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 ADAMTSL4Q6UY14 1074 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 C16orf78Q8WTQ4 265 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 PPCDCQ96CD2 204 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 ARL5BQ96KC2 179 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 HHIPQ96QV1 700 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 OR10A4Q9H209 315 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 REEP4Q9H6H4 257 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 DZANK1Q9NVP4 752 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 OBP2AQ9NY56 170 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 CHST2Q9Y4C5 530 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 MAP4K5Q9Y4K4 846 aa13.01□□□□□ -0.33
LIG1-203ENST00000536218 KIF26AQ9ULI4 1882 aaPredicted RBP13□□□□□ -0.33
LIG1-203ENST00000536218 A0A1W2PQU0 124 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SNAPINO95295 136 aa13□□□□□ -0.33
LIG1-203ENST00000536218 IL3P08700 152 aa13□□□□□ -0.33
LIG1-203ENST00000536218 RNF224P0DH78 156 aa13□□□□□ -0.33
LIG1-203ENST00000536218 AKR1C2P52895 323 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SIM1P81133 766 aaPredicted RBP13□□□□□ -0.33
LIG1-203ENST00000536218 AKR1C1Q04828 323 aa13□□□□□ -0.33
LIG1-203ENST00000536218 GK2Q14410 553 aaPredicted RBP13□□□□□ -0.33
LIG1-203ENST00000536218 GCNT6Q5T4J0 391 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SLC25A25Q6KCM7 469 aa13□□□□□ -0.33
LIG1-203ENST00000536218 WNT2BQ93097 391 aa13□□□□□ -0.33
LIG1-203ENST00000536218 MACROD1Q9BQ69 325 aa13□□□□□ -0.33
LIG1-203ENST00000536218 ZNF251Q9BRH9 671 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SLC6A20Q9NP91 592 aa13□□□□□ -0.33
LIG1-203ENST00000536218 TEX10Q9NXF1 929 aaPredicted RBP13□□□□□ -0.33
LIG1-203ENST00000536218 RPS6KB2Q9UBS0 482 aa13□□□□□ -0.33
LIG1-203ENST00000536218 MSRAQ9UJ68 235 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SF3B6Q9Y3B4 125 aaKnown RBP13□□□□□ -0.33
LIG1-203ENST00000536218 TRBV4-1A0A0J9YWV2 114 aa13□□□□□ -0.33
LIG1-203ENST00000536218 OR6C74A6NCV1 312 aa13□□□□□ -0.33
LIG1-203ENST00000536218 MCRIP1C9JLW8 97 aa13□□□□□ -0.33
LIG1-203ENST00000536218 GABRPO00591 440 aa13□□□□□ -0.33
LIG1-203ENST00000536218 ST8SIA5O15466 376 aa13□□□□□ -0.33
LIG1-203ENST00000536218 PRKYO43930 277 aa13□□□□□ -0.33
LIG1-203ENST00000536218 S100A11P31949 105 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SNRPEP62304 92 aaKnown RBP13□□□□□ -0.33
LIG1-203ENST00000536218 SNRPGP62308 76 aaKnown RBP13□□□□□ -0.33
LIG1-203ENST00000536218 SLC5A12Q1EHB4 618 aa13□□□□□ -0.33
LIG1-203ENST00000536218 PRSS53Q2L4Q9 553 aa13□□□□□ -0.33
LIG1-203ENST00000536218 ZNF528Q3MIS6 628 aa13□□□□□ -0.33
LIG1-203ENST00000536218 TMEM31Q5JXX7 168 aa13□□□□□ -0.33
LIG1-203ENST00000536218 HES5Q5TA89 166 aa13□□□□□ -0.33
LIG1-203ENST00000536218 METRNLQ641Q3 311 aa13□□□□□ -0.33
LIG1-203ENST00000536218 RD3Q7Z3Z2 195 aa13□□□□□ -0.33
LIG1-203ENST00000536218 OR8J1Q8NGP2 316 aa13□□□□□ -0.33
LIG1-203ENST00000536218 NFKBIDQ8NI38 313 aa13□□□□□ -0.33
LIG1-203ENST00000536218 GSDMCQ9BYG8 508 aa13□□□□□ -0.33
LIG1-203ENST00000536218 QRSL1Q9H0R6 528 aaKnown RBP13□□□□□ -0.33
LIG1-203ENST00000536218 MIEF1Q9NQG6 463 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SEMA3GQ9NS98 782 aa13□□□□□ -0.33
LIG1-203ENST00000536218 ZNF69Q9UC07 566 aa13□□□□□ -0.33
LIG1-203ENST00000536218 SEC14L3Q9UDX4 400 aa13□□□□□ -0.33
LIG1-203ENST00000536218 BTNL2Q9UIR0 455 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms