RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 GASTP01350 101 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 BCHEP06276 602 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 CD36P16671 472 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 SNRPNP63162 240 aaKnown RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 HSF1Q00613 529 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 ARHGAP19Q14CB8 494 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 SEC23BQ15437 767 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 HIST2H2ACQ16777 129 aaPredicted RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 DEPDC1Q5TB30 811 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 KHDRBS2Q5VWX1 349 aaKnown RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 HIST2H2AA3Q6FI13 130 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 SPINK14Q6IE38 97 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 ZNF770Q6IQ21 691 aaPredicted RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 LCTLQ6UWM7 567 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 LACC1Q8IV20 430 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 TMCO5AQ8N6Q1 288 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 POGLUT1Q8NBL1 392 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 LILRB4Q8NHJ6 448 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 FAM57AQ8TBR7 257 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 UTP15Q8TED0 518 aaKnown RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 CHPT1Q8WUD6 406 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 NINJ1Q92982 152 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 LGALS12Q96DT0 336 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 ZNF347Q96SE7 839 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 MS4A8Q9BY19 250 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 NPDC1Q9NQX5 325 aaPredicted RBP7.56□□□□□ -1.2
NEDD8-207ENST00000533242 FKBP14Q9NWM8 211 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 ANKRD10Q9NXR5 420 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 CELSR1Q9NYQ6 3014 aa7.56□□□□□ -1.2
NEDD8-207ENST00000533242 P2RX6O15547 441 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NME2P1O60361 137 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NEURL1O76050 574 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NSA2O95478 260 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PTHP01270 115 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ZNF24P17028 368 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 DDCP20711 480 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NME2P22392 152 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 CBLP22681 906 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 GADD45AP24522 165 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PTX3P26022 381 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 MSX1P28360 303 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 CHRNB4P30926 498 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 HSD17B2P37059 387 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 FEN1P39748 380 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ST13P50502 369 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 MAPK12P53778 367 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 DSTNP60981 165 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OC90Q02509 493 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PRDX1Q06830 199 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 RBBP4Q09028 425 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 FADDQ13158 208 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 MFSD4BQ5TF39 518 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 UBE2UQ5VVX9 321 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TRIM40Q6P9F5 258 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 C3P1Q6ZMU1 363 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TMEM200AQ86VY9 491 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 AQP11Q8NBQ7 271 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 EXOSC8Q96B26 276 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TMEM19Q96HH6 336 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 COX4I2Q96KJ9 171 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PIP5K1AQ99755 562 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 FUOMA2VDF0 154 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 GLOD5A6NK44 160 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 CLDN25C9JDP6 229 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 SLC22A1O15245 554 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ZNHIT1O43257 154 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NME6O75414 186 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TOXO94900 526 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 HNRNPCP07910 306 aaKnown RBP eCLIP7.55□□□□□ -1.23e-9■□□□□ 8.5
NEDD8-207ENST00000533242 HOXD4P09016 255 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OCM2P0CE71 109 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OCMP0CE72 109 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PTGS2P35354 604 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ABATP80404 500 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TFF3Q07654 80 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PTGES3Q15185 160 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ZNF750Q32MQ0 723 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 MINDY4Q4G0A6 757 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 RNFT1Q5M7Z0 435 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 SAXO2Q658L1 398 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PAPD4Q6PIY7 484 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ZNF793Q6ZN11 406 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 C17orf64Q86WR6 236 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 P3H2Q8IVL5 708 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 PLPP5Q8NEB5 264 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OR5D16Q8NGK9 328 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OR9A4Q8NGU2 314 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 OR51Q1Q8NH59 317 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 GEMIN6Q8WXD5 167 aaKnown RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ALPK1Q96QP1 1244 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 RHBGQ9H310 441 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 KLHL31Q9H511 634 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 TRIM45Q9H8W5 580 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NMNAT1Q9HAN9 279 aaPredicted RBP7.55□□□□□ -1.2
NEDD8-207ENST00000533242 KCNJ16Q9NPI9 418 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NECTIN3Q9NQS3 549 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 LRFN1Q9P244 771 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 ENPP4Q9Y6X5 453 aa7.55□□□□□ -1.2
NEDD8-207ENST00000533242 NKX2-6A6NCS4 301 aa7.54□□□□□ -1.2
NEDD8-207ENST00000533242 TMEM247A6NEH6 219 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms