RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NDUFAF1Q9Y375 327 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 GPC6Q9Y625 555 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-208ENST00000532560 CACNA1CQ13936 2221 aa13.57□□□□□ -0.24
CPSF1-208ENST00000532560 TMEM247A6NEH6 219 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 NTN1O95631 604 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 BCHEP06276 602 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 SNRPB2P08579 225 aaKnown RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 TFPTP0C1Z6 253 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 UBTFL6P0CB48 400 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 CCR4P51679 360 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 GTF2A1P52655 376 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 CLDN15P56746 228 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 EEFSECP57772 596 aaKnown RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 FOXF1Q12946 379 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 PRAMEF8Q5VWM4 474 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 PRAMEF7Q5VXH5 474 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 FAM91A1Q658Y4 838 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 DHDDSQ86SQ9 333 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 RETREG3Q86VR2 466 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 UBQLNLQ8IYU4 475 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 METTL25Q8N6Q8 603 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 TNIP2Q8NFZ5 429 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 POC1BQ8TC44 478 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 SLC38A5Q8WUX1 472 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 WNT2BQ93097 391 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 MRGPRX4Q96LA9 322 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 ZFP3Q96NJ6 502 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 NPAS1Q99742 590 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 MTHFD2LQ9H903 347 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 A4GALTQ9NPC4 353 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 EXOSC3Q9NQT5 275 aaKnown RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-208ENST00000532560 KIAA1549Q9HCM3 1950 aa13.56□□□□□ -0.24
CPSF1-208ENST00000532560 UTP20O75691 2785 aaKnown RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 SEC14L5O43304 696 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 BCAS1O75363 584 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 IL2RAP01589 272 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 DBIP07108 87 aaKnown RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 NID1P14543 1247 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 PRKCAP17252 672 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 SUCLG1P53597 346 aaKnown RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 CLDN20P56880 219 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 RAC1P63000 192 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 KCNJ10P78508 379 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 PLAURQ03405 335 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 SF3A3Q12874 501 aaKnown RBP eCLIP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 QPRTQ15274 297 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 TOMM34Q15785 309 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 SLC25A53Q5H9E4 307 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 GCNT6Q5T4J0 391 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 HIST2H2BCQ6DN03 193 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 GGNQ86UU5 652 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 C9orf106Q8NAJ2 232 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 NAXEQ8NCW5 288 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 WDR60Q8WVS4 1066 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 ST8SIA1Q92185 356 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 TMEM19Q96HH6 336 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 ADGRG7Q96K78 797 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 TM9SF2Q99805 663 aa13.55□□□□□ -0.24
CPSF1-208ENST00000532560 TREX2Q9BQ50 279 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 CPPED1Q9BRF8 314 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 THUMPD3Q9BV44 507 aaKnown RBP13.55□□□□□ -0.24
CPSF1-208ENST00000532560 HEATR5AQ86XA9 2040 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 DOCK7Q96N67 2140 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 CLDN24A6NM45 220 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 FAM90A27PA6NNH2 459 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 H0YC42 278 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 SLC22A2O15244 555 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 CYP7B1O75881 506 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 NUDT7P0C024 238 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 ARAFP10398 606 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 GPX2P18283 190 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 PGCP20142 388 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 ME2P23368 584 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 COL8A1P27658 744 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 GRNP28799 593 aaKnown RBP13.54□□□□□ -0.24
CPSF1-208ENST00000532560 ADSLP30566 484 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-208ENST00000532560 ZNF136P52737 540 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 TPD52P55327 224 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-208ENST00000532560 DLX5P56178 289 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 RPS3AP61247 264 aaKnown RBP13.54□□□□□ -0.24
CPSF1-208ENST00000532560 TFF3Q07654 80 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 KLF10Q13118 480 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 MAPRE2Q15555 327 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 SLC25A35Q3KQZ1 300 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 COQ5Q5HYK3 327 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 CHMP1BQ7LBR1 199 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 HMGN2P46Q86SG4 172 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 GRAMD2AQ8IUY3 354 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 PEX5LQ8IYB4 626 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 FBXO27Q8NI29 283 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 BBS10Q8TAM1 723 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 SMPDL3BQ92485 455 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 MAL2Q969L2 176 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 CGREF1Q99674 301 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 MYLK2Q9H1R3 596 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 IKZF5Q9H5V7 419 aa13.54□□□□□ -0.24
CPSF1-208ENST00000532560 BCL2L10Q9HD36 194 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms