RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IMMTQ16891 758 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 SLC16A9Q7RTY1 509 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 ZNF589Q86UQ0 364 aaPredicted RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 TMEM126BQ8IUX1 230 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 ZC3H3Q8IXZ2 948 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 SMYD1Q8NB12 490 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 OR7A2PQ8NGA2 310 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 OR2T11Q8NH01 316 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 DDI1Q8WTU0 396 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CT55Q8WUE5 264 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 HPSE2Q8WWQ2 592 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 SLC13A3Q8WWT9 602 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 METTL21AQ8WXB1 218 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 FBXO32Q969P5 355 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 RFT1Q96AA3 541 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 DTD2Q96FN9 168 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 EEF2KMTQ96G04 330 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 SPATA13Q96N96 652 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 LHX9Q9NQ69 397 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 INTS9Q9NV88 658 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 SEC14L3Q9UDX4 400 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 GGA2Q9UJY4 613 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 MAN1B1Q9UKM7 699 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 GRID1Q9ULK0 1009 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 TDRKHQ9Y2W6 561 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 TMED7Q9Y3B3 224 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 HRNRQ86YZ3 2850 aaPredicted RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 TTC41PQ6P2S7 1318 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 IGLV7-46A0A075B6I9 117 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 A0A0D9SFI3 127 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 SYCE3A1L190 88 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 KRT87PA6NCN2 255 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CD5LO43866 347 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TOXO94900 526 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CTSEP14091 401 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 UGT1A4P22310 534 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 AHCYP23526 432 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CETN2P41208 172 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CD86P42081 329 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 METAP1P53582 386 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 SLC8A3P57103 927 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 SLC3A1Q07837 685 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 ABRQ12979 859 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TRDNQ13061 729 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TRIM29Q14134 588 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TMEM132DQ14C87 1099 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 ZNF239Q16600 458 aaKnown RBP3.2□□□□□ -1.9
CD44-235ENST00000532339 MPPE1Q53F39 396 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 ARMCX4Q5H9R4 360 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 COX8CQ7Z4L0 72 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 C5orf24Q7Z6I8 188 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 STK40Q8N2I9 435 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TMEM86AQ8N2M4 240 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 LIX1Q8N485 282 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 PDCL2Q8N4E4 241 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 GBP7Q8N8V2 638 aaPredicted RBP3.2□□□□□ -1.9
CD44-235ENST00000532339 SLC37A3Q8NCC5 494 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 OR52E1Q8NGJ3 308 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 OR4C15Q8NGM1 316 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 OR1L3Q8NH93 324 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 GGHQ92820 318 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 FRAT1Q92837 279 aaPredicted RBP3.2□□□□□ -1.9
CD44-235ENST00000532339 MYLPFQ96A32 169 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 PRAC1Q96KF2 57 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 RUFY1Q96T51 708 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 SYT15Q9BQS2 421 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 ABCG8Q9H221 673 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CARD9Q9H257 536 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 EGLN3Q9H6Z9 239 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 KCNJ16Q9NPI9 418 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 YAE1D1Q9NRH1 226 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 NINJ2Q9NZG7 142 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 IL36AQ9UHA7 158 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 SLC12A6Q9UHW9 1150 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 PPP2R2CQ9Y2T4 447 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 L3MBTL1Q9Y468 752 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CSAG2Q9Y5P2 127 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 CMYA5Q8N3K9 4069 aa3.2□□□□□ -1.9
CD44-235ENST00000532339 TRBV2A0A0J9YWF9 115 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 C2orf92A0A1B0GVN3 265 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 FAM92AA1XBS5 289 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 RAD51BO15315 384 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 MLNRO43193 412 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 KIF5CO60282 957 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 SMPD2O60906 423 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TOM1L1O75674 476 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 KIAA0754O94854 1291 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 SLITRK3O94933 977 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 NUDT17P0C025 328 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TRIM49P0CI25 452 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TRIM49CP0CI26 452 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 UGT1A6P19224 532 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 IL10P22301 178 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 CA5AP35218 305 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TNFSF10P50591 281 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 RPS21P63220 83 aaKnown RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 CDR2Q01850 454 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 WASHC5Q12768 1159 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 LCP2Q13094 533 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 SRSF9Q13242 221 aaKnown RBP eCLIP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms