RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CCNIQ14094 377 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 FGFBP1Q14512 234 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 KPNB1Q14974 876 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 DEFB109BQ30KR1 87 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 FAM98BQ52LJ0 330 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 SLC22A10Q63ZE4 541 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SLC30A6Q6NXT4 461 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ZFP1Q6P2D0 407 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 BORAQ6PGQ7 559 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 DHRS4L2Q6PKH6 230 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 IGFL2Q6UWQ7 119 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ISLR2Q6UXK2 745 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CYP2R1Q6VVX0 501 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 C16orf47Q6ZP98 133 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 FKBP9P1Q75LS8 142 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 PIWIL3Q7Z3Z3 882 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 SPATA24Q86W54 205 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 MISPQ8IVT2 679 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 TMEM156Q8N614 296 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 AMER2Q8N7J2 671 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 EXD3Q8N9H8 876 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 FBXO30Q8TB52 745 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 BRIX1Q8TDN6 353 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 RNF138Q8WVD3 245 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ASB15Q8WXK1 588 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 HGDQ93099 445 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 TAMM41Q96BW9 452 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CCDC124Q96CT7 223 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 NTNG2Q96CW9 530 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 SPACA9Q96E40 222 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 RSPO3Q9BXY4 272 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 RNF32Q9H0A6 362 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 MAGIXQ9H6Y5 334 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ZNF552Q9H707 407 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 YY1AP1Q9H869 796 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CACYBPQ9HB71 228 aaKnown RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 IL1RAPQ9NPH3 570 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ARMC1Q9NVT9 282 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 KLHL28Q9NXS3 571 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ABI3Q9P2A4 366 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 CGGBP1Q9UFW8 167 aaPredicted RBP6.77□□□□□ -1.33
CD44-228ENST00000528455 KCNE5Q9UJ90 142 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 ABCG2Q9UNQ0 655 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 EXPH5Q8NEV8 1989 aa6.77□□□□□ -1.33
CD44-228ENST00000528455 PCNX3Q9H6A9 2034 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 DHRS12A0PJE2 317 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 TMEM82A0PJX8 343 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 CDHR4A6H8M9 788 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SERINC4A6NH21 518 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 H0YHG0 523 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 MASP2O00187 686 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 HNRNPRO43390 633 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 TPST1O60507 370 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 EIF4E2O60573 245 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 DPM1O60762 260 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 UGT2B11O75310 529 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 OR6B1O95007 311 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ZNF205O95201 554 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SNX4O95219 450 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 RAP2AP10114 183 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PRKAR1AP10644 381 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ITGA2P17301 1181 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PSMA4P25789 261 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 AQP1P29972 269 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 DCTP40126 519 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SOX3P41225 446 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 CASP3P42574 277 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 EEF1A1P68104 462 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 MFAP5Q13361 173 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 NNATQ16517 81 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 MAPK14Q16539 360 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 GRAMD1BQ3KR37 738 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 LIN52Q52LA3 116 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 EIPR1Q53HC9 387 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ATP1A1-AS1Q5TC04 95 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 RNF220Q5VTB9 566 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 IGFL3Q6UXB1 125 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 IL20RBQ6UXL0 311 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 RTL4Q6ZR62 310 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 VRK2Q86Y07 508 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ZNF440Q8IYI8 595 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PRR22Q8IZ63 422 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SIRT6Q8N6T7 355 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PAQR8Q8TEZ7 354 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 CANT1Q8WVQ1 401 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PROX1Q92786 737 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 EFHD2Q96C19 240 aaPredicted RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 C7orf34Q96L11 122 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ALPK1Q96QP1 1244 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 UTP23Q9BRU9 249 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 ANGPTL4Q9BY76 406 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ADNPQ9H2P0 1102 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 HPF1Q9NWY4 346 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 ANAPC2Q9UJX6 822 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SLC35A3Q9Y2D2 325 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SH3GLB1Q9Y371 365 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 SF3B6Q9Y3B4 125 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 RRP15Q9Y3B9 282 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 CHST2Q9Y4C5 530 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 AP4S1Q9Y587 144 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms