RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ADAM2Q99965 735 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 ZNF2Q9BSG1 426 aaPredicted RBP5.42□□□□□ -1.54
CD44-225ENST00000527326 WRAP53Q9BUR4 548 aaKnown RBP5.42□□□□□ -1.54
CD44-225ENST00000527326 WDR18Q9BV38 432 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 RIOK2Q9BVS4 552 aaKnown RBP5.42□□□□□ -1.54
CD44-225ENST00000527326 DDA1Q9BW61 102 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 SUCNR1Q9BXA5 334 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 KRTAP9-9Q9BYP9 154 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 KRTAP9-4Q9BYQ2 154 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 DERL2Q9GZP9 239 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 MFFQ9GZY8 342 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 FXYD6Q9H0Q3 95 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 SLC26A1Q9H2B4 701 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 EPHX3Q9H6B9 360 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 WDCPQ9H6R7 721 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 SEC61A2Q9H9S3 476 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 FKRPQ9H9S5 495 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 APOBEC3GQ9HC16 384 aaKnown RBP5.42□□□□□ -1.54
CD44-225ENST00000527326 AMBNQ9NP70 447 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 TREM1Q9NP99 234 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 PDLIM7Q9NR12 457 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 MMP26Q9NRE1 261 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 NRBP2Q9NSY0 501 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 RBM22Q9NW64 420 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-225ENST00000527326 ZSCAN32Q9NX65 697 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 TAS2R16Q9NYV7 291 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 TAS2R10Q9NYW0 307 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 SLAMF8Q9P0V8 285 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 NTMQ9P121 344 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 LUZP4Q9P127 313 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 FZD10Q9ULW2 581 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 POLR3KQ9Y2Y1 108 aaPredicted RBP5.42□□□□□ -1.54
CD44-225ENST00000527326 FBXO7Q9Y3I1 522 aa5.42□□□□□ -1.54
CD44-225ENST00000527326 DOCK1Q14185 1865 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 WDR90Q96KV7 1748 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 CDRT15L2A8MXV6 281 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 LRRN3E7EW58 273 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 F5H5P2 479 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CLIC1O00299 241 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 FOXE1O00358 373 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 SYT5O00445 386 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 TP53I11O14683 189 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CTDSPLO15194 276 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 FGF16O43320 207 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 EEF1E1O43324 174 aaKnown RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 BCL2L11O43521 198 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 GSTZ1O43708 216 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 REM1O75628 298 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 PSMD10O75832 226 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SLC25A27O95847 323 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 ADAP00813 363 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 HPXP02790 462 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 HLA-DOAP06340 250 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 ANXA2P07355 339 aaKnown RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 SYPP08247 313 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 LINC00032P0C843 101 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 UROSP10746 265 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 BCKDHAP12694 445 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 INSRRP14616 1297 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 ELK1P19419 428 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 GABRR1P24046 479 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 BDKRB2P30411 391 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CSNK1DP48730 415 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 MMP15P51511 669 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 IDH3GP51553 393 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 MECP2P51608 486 aaKnown RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 PNLIPRP2P54317 469 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CDH11P55287 796 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 NRG3P56975 720 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 DAOAP59103 153 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 TAS2R39P59534 338 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 RAB8AP61006 207 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SHC2P98077 582 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CDK6Q00534 326 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SP3Q02447 781 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CACNB2Q08289 660 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 TMEM115Q12893 351 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 SRSF5Q13243 272 aaKnown RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 SQSTM1Q13501 440 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 EIF4EBP2Q13542 120 aaPredicted RBP5.41□□□□□ -1.54
CD44-225ENST00000527326 SCARB2Q14108 478 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 NDUFA9Q16795 377 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SLC36A2Q495M3 483 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SCGB2B2Q4G0G5 96 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 TIGD5Q53EQ6 642 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 NCMAPQ5T1S8 102 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 C1orf185Q5T7R7 199 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 FBXW9Q5XUX1 488 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 OR10K2Q6IF99 312 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 ULK3Q6PHR2 472 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 CD200R1LQ6Q8B3 271 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 UNQ6494/PRO21346Q6UXR6 183 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 GAREM2Q75VX8 874 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 ANKRD33Q7Z3H0 272 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 PPP1R3BQ86XI6 285 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 SIAH3Q8IW03 269 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 GCNT2Q8N0V5 402 aa5.41□□□□□ -1.54
CD44-225ENST00000527326 STK40Q8N2I9 435 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms