RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RASSF1Q9NS23 344 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 DNAJB12Q9NXW2 375 aaKnown RBP18.5■□□□□ 0.55
VPS28-206ENST00000526734 NDRG3Q9UGV2 375 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 KCNE5Q9UJ90 142 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 DCHS2Q6V1P9 2916 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 UQCRHLA0A096LP55 91 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 A0A0J9YW62 118 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 FAM234BA2RU67 622 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 C9JVG2 144 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 HMGN4O00479 90 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 TNFSF11O14788 317 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 SS18L1O75177 396 aaPredicted RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 AQP8O94778 261 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 PLGP00747 810 aaPredicted RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 SIRPAP78324 504 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 FUT5Q11128 374 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 QPRTQ15274 297 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 GPAT3Q53EU6 434 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 VWA1Q6PCB0 445 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 FRRS1Q6ZNA5 592 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 BTLAQ7Z6A9 289 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 FAM71CQ8NEG0 241 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 RFWD2Q8NHY2 731 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 REXO5Q96IC2 774 aaKnown RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 KLHDC3Q9BQ90 382 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 INPP5KQ9BT40 448 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 CCDC28BQ9BUN5 200 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 TMEM185BQ9H7F4 350 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 FANCFQ9NPI8 374 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 TCF7L2Q9NQB0 619 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 EXOSC3Q9NQT5 275 aaKnown RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 THUMPD1Q9NXG2 353 aaKnown RBP18.49■□□□□ 0.55
VPS28-206ENST00000526734 PROCRQ9UNN8 238 aa18.49■□□□□ 0.55
VPS28-206ENST00000526734 ANP32DO95626 131 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CGAP01215 116 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 IL11P20809 199 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CPOXP36551 454 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CD79BP40259 229 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CDKN2CP42773 168 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 POLR2JP52435 117 aaKnown RBP18.48■□□□□ 0.55
VPS28-206ENST00000526734 CASP9P55211 416 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CTBP2P56545 445 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CARD18P57730 90 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 SNTB1Q13884 538 aaKnown RBP18.48■□□□□ 0.55
VPS28-206ENST00000526734 GNA13Q14344 377 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 NDUFAF6Q330K2 333 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 PPP4R4Q6NUP7 873 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 C3orf33Q6P1S2 294 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 LRRC74BQ6ZQY2 392 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 STON2Q8WXE9 905 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 OSTF1Q92882 214 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 MARK4Q96L34 752 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CLEC4MQ9H2X3 399 aaPredicted RBP18.48■□□□□ 0.55
VPS28-206ENST00000526734 GP6Q9HCN6 339 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 SERINC1Q9NRX5 453 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 INTS9Q9NV88 658 aaKnown RBP18.48■□□□□ 0.55
VPS28-206ENST00000526734 TMEM45AQ9NWC5 275 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 CALML5Q9NZT1 146 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 PRDM4Q9UKN5 801 aa18.48■□□□□ 0.55
VPS28-206ENST00000526734 MED12LQ86YW9 2145 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 SH3D21A4FU49 640 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 H6PDO95479 791 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 UBTFL6P0CB48 400 aaPredicted RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 SLC7A1P30825 629 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 SFTPDP35247 375 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 PGM1P36871 562 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 SLC6A8P48029 635 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 RNF144AP50876 292 aaPredicted RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 PPP2R2AP63151 447 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 RNPS1Q15287 305 aaKnown RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 TOMM34Q15785 309 aaPredicted RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 ZNF239Q16600 458 aaKnown RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 ZFP90Q8TF47 636 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 SLC25A43Q8WUT9 341 aaPredicted RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 GPATCH1Q9BRR8 931 aaKnown RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 TACO1Q9BSH4 297 aaKnown RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 THUMPD3Q9BV44 507 aaKnown RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 SLCO1B3Q9NPD5 702 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 ACER3Q9NUN7 267 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 P2RX2Q9UBL9 471 aa18.47■□□□□ 0.55
VPS28-206ENST00000526734 SPIN1Q9Y657 262 aaPredicted RBP18.47■□□□□ 0.55
VPS28-206ENST00000526734 PDZD2O15018 2839 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 PCNX3Q9H6A9 2034 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 CENPVL1A0A0U1RR11 272 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 CYP7B1O75881 506 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 GSNP06396 782 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 NR2F1P10589 423 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 FKBP2P26885 142 aaKnown RBP18.46■□□□□ 0.55
VPS28-206ENST00000526734 KCNJ10P78508 379 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 CHRNEQ04844 493 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 MAPK14Q16539 360 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 TIGD2Q4W5G0 525 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 LINC01560Q8TB33 94 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 RNF128Q8TEB7 428 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 NINJ1Q92982 152 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 OPN3Q9H1Y3 402 aaPredicted RBP18.46■□□□□ 0.55
VPS28-206ENST00000526734 SLC38A1Q9H2H9 487 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 RAD21L1Q9H4I0 556 aa18.46■□□□□ 0.55
VPS28-206ENST00000526734 MTHFD2LQ9H903 347 aaPredicted RBP18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms