RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PRKCAP17252 672 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 COX5AP20674 150 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 OR3A2P47893 321 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 SLC18A1P54219 525 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 MAGOHP61326 146 aaKnown RBP12.61□□□□□ -0.39
CPSF1-201ENST00000526271 ITGADQ13349 1161 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 ETFDHQ16134 617 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 TMEM176BQ3YBM2 270 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-201ENST00000526271 CCDC153Q494R4 210 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 TTMPQ5BVD1 217 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 C6orf52Q5T4I8 152 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 OR6Y1Q8NGX8 325 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 TCP10LQ8TDR4 215 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 HSD17B8Q92506 261 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 ZBED6CLQ96FA7 236 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-201ENST00000526271 TACO1Q9BSH4 297 aaKnown RBP12.61□□□□□ -0.39
CPSF1-201ENST00000526271 SERHL2Q9H4I8 314 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 REEP4Q9H6H4 257 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 GPATCH2Q9NW75 528 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 CARD8Q9Y2G2 431 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 STK38LQ9Y2H1 464 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 TENM1Q9UKZ4 2725 aa12.61□□□□□ -0.39
CPSF1-201ENST00000526271 A0A1W2PP18 115 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 TMEM233B4DJY2 109 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 PLIN3O60664 434 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 BCAS1O75363 584 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 SEC22BO75396 215 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 PGM3O95394 542 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 HMGN2P05204 90 aaKnown RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 YES1P07947 543 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 ELK4P28324 431 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 ZNF41P51814 821 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 PLAURQ03405 335 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 MPP2Q14168 576 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 IMPG1Q17R60 797 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 UGT3A2Q3SY77 523 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 SLC25A53Q5H9E4 307 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 Q6ZT83 130 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 BHLHA15Q7RTS1 189 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 STK32CQ86UX6 486 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 ZFP90Q8TF47 636 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 KISS1RQ969F8 398 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 CPNE4Q96A23 557 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 TRMT61AQ96FX7 289 aaKnown RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 CCT7Q99832 543 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 BTBD2Q9BX70 525 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 HDHD5Q9BXW7 423 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 POTEKPQ9BYX7 375 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 GRIP2Q9C0E4 1043 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 ESRP2Q9H6T0 727 aaKnown RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 LRTM1Q9HBL6 345 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 ACSS1Q9NUB1 689 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 C1orf109Q9NX04 203 aa12.6□□□□□ -0.39
CPSF1-201ENST00000526271 CISD1Q9NZ45 108 aaKnown RBP12.6□□□□□ -0.39
CPSF1-201ENST00000526271 A8MV72 311 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 HMGB1P1B2RPK0 211 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 LSM1O15116 133 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 RGS14O43566 566 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 SSX4O60224 188 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 DNAJA2O60884 412 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 PRKD3O94806 890 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 IL32P24001 234 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 ARRB2P32121 409 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 GPC1P35052 558 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 ETV4P43268 484 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 RPL38P63173 70 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 LASP1Q14847 261 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 RNPS1Q15287 305 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 TMEM249Q2WGJ8 235 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 TMEM201Q5SNT2 666 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 PODNL1Q6PEZ8 512 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 ARIH2OSQ8N7S6 290 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 GOLGA6L1Q8N7Z2 621 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 COX18Q8N8Q8 333 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 ATP6V1C2Q8NEY4 427 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 OR7A2PQ8NGA2 310 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 CEP70Q8NHQ1 597 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 PHOSPHO1Q8TCT1 267 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 GTPBP3Q969Y2 492 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 PPCDCQ96CD2 204 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 QRSL1Q9H0R6 528 aaKnown RBP12.59□□□□□ -0.39
CPSF1-201ENST00000526271 OXSMQ9NWU1 459 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 SH3BP4Q9P0V3 963 aa12.59□□□□□ -0.39
CPSF1-201ENST00000526271 SCDO00767 359 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 TM9SF1O15321 606 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 CYTIPO60759 359 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 ALOX5P09917 674 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 UROSP10746 265 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 MYL2P10916 166 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 LAMP1P11279 417 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 BCKDHAP12694 445 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 LCN1P31025 176 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 EIF1P41567 113 aaKnown RBP12.58□□□□□ -0.4
CPSF1-201ENST00000526271 P2RX1P51575 399 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 DNAJB13P59910 316 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 POU6F2P78424 691 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-201ENST00000526271 LIPMQ5VYY2 423 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 KANK2Q63ZY3 851 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 SZRD1Q7Z422 152 aa12.58□□□□□ -0.4
CPSF1-201ENST00000526271 MISPQ8IVT2 679 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms