RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LIPNQ5VXI9 398 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM24BQ8N5W8 94 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 OR2L5Q8NG80 312 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 OR51S1Q8NGJ8 323 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 OR2G2Q8NGZ5 317 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 OR10J5Q8NHC4 309 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 SMIM4Q8WVI0 70 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 SMARCD1Q96GM5 515 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 C20orf24Q9BUV8 137 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 C1GALT1Q9NS00 363 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 GAR1Q9NY12 217 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 MARCH11A6NNE9 402 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 KIAA0355O15063 1070 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 FOSL2P15408 326 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 HIST1H1BP16401 226 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 LAG3P18627 525 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 TRIM40Q6P9F5 258 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 OR1J4Q8NGS1 313 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 HAVCR2Q8TDQ0 301 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SMAP2Q8WU79 429 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 METTL9Q9H1A3 318 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 GOLGA2P5Q9HBQ8 144 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 FGF20Q9NP95 211 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 GKN1Q9NS71 199 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 FBXW2Q9UKT8 454 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 KIAA1217Q5T5P2 1943 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SULT2B1O00204 365 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SLC9A5Q14940 896 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 TEAD2Q15562 447 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 OR7A5Q15622 319 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 MUC20Q8N307 709 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 HORMAD2Q8N7B1 307 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 GPRC5AQ8NFJ5 357 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 OR4A4PQ8NGN8 299 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 HMCESQ96FZ2 354 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SLITRK2Q9H156 845 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 EGLN3Q9H6Z9 239 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ASB6Q9NWX5 421 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 FBXL3Q9UKT7 428 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 CAMK2AQ9UQM7 478 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 STRCQ7RTU9 1775 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 KCNAB3O43448 404 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 PRAMEF12O95522 483 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 IFNA2P01563 188 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 GNSP15586 552 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ELAVL4P26378 380 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 MC4RP32245 332 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 MPIP34949 423 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ACVR1BP36896 505 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 CACNG1Q06432 222 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF234Q14588 700 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SSPNQ14714 243 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 CPTPQ5TA50 214 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ADNP2Q6IQ32 1131 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SMARCD3Q6STE5 483 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SLC36A4Q6YBV0 504 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 TAF8Q7Z7C8 310 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 LRRTM4Q86VH4 590 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 BEST3Q8N1M1 668 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 LRRC52Q8N7C0 313 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 BBS10Q8TAM1 723 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ECHDC3Q96DC8 303 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ALG8Q9BVK2 526 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 MVB12BQ9H7P6 319 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 CRLF2Q9HC73 371 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 TAS2R10Q9NYW0 307 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SLC27A6Q9Y2P4 619 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 ALPK3Q96L96 1907 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 EVPLQ92817 2033 aa11.22□□□□□ -0.61
LIMCH1-213ENST00000511496 SNRPGP15A8MWD9 76 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 PAX6P26367 422 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 SLC6A11P48066 632 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 KIAA0141Q14154 515 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 DHCR24Q15392 516 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 LIPJQ5W064 366 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 OR10K2Q6IF99 312 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 PAQR9Q6ZVX9 377 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 GLT6D1Q7Z4J2 308 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 THEM5Q8N1Q8 247 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 CD99L2Q8TCZ2 262 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 NECAB3Q96P71 396 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 SIRT7Q9NRC8 400 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM120CQ9NX05 1096 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 KLK14Q9P0G3 267 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 AKT3Q9Y243 479 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 ABCA3Q99758 1704 aa11.21□□□□□ -0.61
LIMCH1-213ENST00000511496 ANK1P16157 1881 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 A0A0D9SG52 128 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 TRAPPC13A5PLN9 417 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 GLTPD2A6NH11 291 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 RFPL4AA6NLU0 287 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 RFPL4AL1F8VTS6 287 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 NPIPB9F8W1W9 429 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 CYTIPO60759 359 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 H1F0P07305 194 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 C1GALT1C1LP0DN25 315 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ATF1P18846 271 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 TBXA2RP21731 343 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 XPAP23025 273 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ACKR3P25106 362 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms