RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SERINC2Q96SA4 455 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SMC6Q96SB8 1091 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 BAG1Q99933 345 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 SH3GL2Q99962 352 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 PIGQQ9BRB3 760 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CENPKQ9BS16 269 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 EFCAB11Q9BUY7 163 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SFXN3Q9BWM7 321 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 OR10A4Q9H209 315 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CHRAC1Q9NRG0 131 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 ABCF3Q9NUQ8 709 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TRMT1Q9NXH9 659 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 ALKBH4Q9NXW9 302 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 STOX2Q9P2F5 926 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 NDRG3Q9UGV2 375 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TRMT6Q9UJA5 497 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 PLAGL1Q9UM63 463 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 DAPP1Q9UN19 280 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 ERVK-11Q9UQG0 969 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 EIF3LQ9Y262 564 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 CFL2Q9Y281 166 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CRYL1Q9Y2S2 319 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 MRPS18CQ9Y3D5 142 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 NAALAD2Q9Y3Q0 740 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 NFS1Q9Y697 457 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CLCA3PQ9Y6N3 262 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CPAMD8Q8IZJ3 1885 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CADP27708 2225 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TENM2Q9NT68 2774 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 DYNC2H1Q8NCM8 4307 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 CMYA5Q8N3K9 4069 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SCN2AQ99250 2005 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CCDC88CQ9P219 2028 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TRGV5A0A0B4J1U4 118 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TMEM89A2RUT3 159 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CTAGE9A4FU28 777 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 IQCF5A8MTL0 148 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TP53I11O14683 189 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CASKO14936 926 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 NDUFS4O43181 175 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CHST10O43529 356 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 LMX1BO60663 402 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 IFNB1P01574 187 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 LCATP04180 440 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 MYZAPP0CAP1 466 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CCDC166P0CW27 439 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 FCGR2AP12318 317 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CYP4B1P13584 511 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 IL1RNP18510 177 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 PGAM1P18669 254 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TYK2P29597 1187 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TLX1P31314 330 aaPredicted RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 FMO4P31512 558 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 GGT5P36269 586 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ACVR1BP36896 505 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 MAGEA3P43357 314 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 BDKRB1P46663 353 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 GAS1P54826 345 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DIO3P55073 304 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 MTTPP55157 894 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 HNRNPH2P55795 449 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 RAB38P57729 211 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DSCR9P59020 149 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 REEP5Q00765 189 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 PLGLB1Q02325 96 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 DHX34Q14147 1143 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 RCAN2Q14206 197 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 FASTKQ14296 549 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 SQLEQ14534 574 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SIX1Q15475 284 aaPredicted RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 BCL2A1Q16548 175 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TMEM249Q2WGJ8 235 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 GALNTL6Q49A17 601 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 RUNDC3AQ59EK9 446 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ACSBG2Q5FVE4 666 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TMEM268Q5VZI3 342 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SLC22A10Q63ZE4 541 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ZNF470Q6ECI4 717 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 RTL6Q6ICC9 239 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 OR2A2Q6IF42 318 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TRIM40Q6P9F5 258 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 AGTRAPQ6RW13 159 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TMIGD1Q6UXZ0 262 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CYS1Q717R9 158 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CENPUQ71F23 418 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 RNF144BQ7Z419 303 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 KIAA1328Q86T90 577 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SLC26A11Q86WA9 606 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TAGAPQ8N103 731 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 NKAPQ8N5F7 415 aaKnown RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 RFLNBQ8N5W9 214 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 METTL27Q8N6F8 245 aaPredicted RBP3.5□□□□□ -1.85
USP54-217ENST00000498213 OTUD6BQ8N6M0 293 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ZNF740Q8NDX6 193 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 TRIM58Q8NG06 486 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 OR2L5Q8NG80 312 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 OR2M7Q8NG81 312 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 SVIPQ8NHG7 77 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 ZPLD1Q8TCW7 415 aa3.5□□□□□ -1.85
USP54-217ENST00000498213 CD200R1Q8TD46 325 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms