RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MCHR1Q99705 422 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF471Q9BX82 626 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RAB11FIP5Q9BXF6 653 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF768Q9H5H4 540 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MRPS33Q9Y291 106 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRELID3BQ9Y3B1 194 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HEBP2Q9Y5Z4 205 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR2AT4A6NND4 320 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TTLL8A6PVC2 850 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RAB36O95755 333 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SERPINA3P01011 423 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GLULP15104 373 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DRD1P21728 446 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HSD17B2P37059 387 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KHKP50053 298 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PSPHP78330 225 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF169Q14929 603 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HES5Q5TA89 166 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5M10Q6IEU7 315 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARL9Q6T311 187 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRSS41Q7RTY9 318 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RIMKLAQ8IXN7 391 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5P2Q8WZ92 322 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TREX2Q9BQ50 279 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MRPL15Q9P015 296 aaKnown RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 H0YGG7 62 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GFRA2O00451 464 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CLDN4O14493 209 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TGM4P49221 684 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARF3P61204 181 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 COL13A1Q5TAT6 717 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LCTLQ6UWM7 567 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZSCAN1Q8NBB4 408 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAM98AQ8NCA5 519 aaKnown RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 THAP6Q8TBB0 222 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TM4SF18Q96CE8 201 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC25A36Q96CQ1 311 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NIPSNAP1Q9BPW8 284 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 THAP7Q9BT49 309 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 C1QTNF3Q9BXJ4 246 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HDAC8Q9BY41 377 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BTNL2Q9UIR0 455 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IGLV3-16A0A075B6K0 115 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPK0 400 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CD8B2A6NJW9 211 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAM183AA6NL82 134 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IL1AP01583 271 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OPN1LWP04000 364 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CSF3P09919 207 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CD8BP10966 210 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HSD3B1P14060 373 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HSD3B2P26439 372 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GIFP27352 417 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MAP2K6P52564 334 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FOXL2P58012 376 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SELENOWP63302 87 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NFATC4Q14934 902 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ATXN7L3Q14CW9 347 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PAN3Q58A45 887 aaKnown RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PTCRAQ6ISU1 281 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ABHD13Q7L211 337 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5T2Q8NGG2 359 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CHTF18Q8WVB6 975 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDS1Q92903 461 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MAP3K3Q99759 626 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BHLHE41Q9C0J9 482 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LMAN2LQ9H0V9 348 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GLIPR2Q9H4G4 154 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDCP1Q9H5V8 836 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MVB12BQ9H7P6 319 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MRPS17Q9Y2R5 130 aaKnown RBP10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CACNG2Q9Y698 323 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DNAH14Q0VDD8 3507 aa10.03□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GRXCR2A6NFK2 248 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 C2orf74A8MZ97 194 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 K7EQS6 105 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LGALS8O00214 317 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LDOC1O95751 146 aaPredicted RBP10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LALBAP00709 142 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 POU3F3P20264 500 aaPredicted RBP10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KLHL36Q8N4N3 616 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CYB561A3Q8NBI2 242 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC16A11Q8NCK7 471 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TTLQ8NG68 377 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR2A1Q8NGT9 310 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR6K6Q8NGW6 343 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RFKQ969G6 155 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAM46AQ96IP4 442 aaKnown RBP10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDCA3Q99618 268 aaPredicted RBP10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MS4A8Q9BY19 250 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ACTR6Q9GZN1 396 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FSCN3Q9NQT6 498 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 USP36Q9P275 1121 aaKnown RBP10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SCP2D1Q9UJQ7 156 aa10.02□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF98A6NK75 572 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C1orf196B1AJZ1 125 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GATBO75879 557 aaKnown RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SOD1P00441 154 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 S100A2P29034 98 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms