RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 GIMAP5Q96F15 307 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF764Q96H86 408 aaPredicted RBP12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 FOXN4Q96NZ1 517 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 MS4A4EQ96PG1 132 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 SORCS2Q96PQ0 1159 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 SOX7Q9BT81 388 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 BHLHE41Q9C0J9 482 aaPredicted RBP12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 TAS2R16Q9NYV7 291 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 MALT1Q9UDY8 824 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 TMEFF2Q9UIK5 374 aaPredicted RBP12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 ICAM5Q9UMF0 924 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 STK38LQ9Y2H1 464 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 ATP23Q9Y6H3 246 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 CIB4A0PJX0 185 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 CCDC151A5D8V7 595 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ZSCAN12O43309 604 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ENO1P06733 434 aaKnown RBP12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 SBK3P0C264 359 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ACP2P11117 423 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 CHRNEQ04844 493 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 PDK3Q15120 406 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 UAP1Q16222 522 aaPredicted RBP12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ZSWIM7Q19AV6 140 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 MST1LQ2TV78 715 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 IQCCQ4KMZ1 466 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 EXOSC6Q5RKV6 272 aaKnown RBP12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ABLIM2Q6H8Q1 611 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 ZCCHC12Q6PEW1 402 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 TMEM151AQ8N4L1 468 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 CDC26Q8NHZ8 85 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 FBXO25Q8TCJ0 367 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 MRRFQ96E11 262 aaKnown RBP12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 MUS81Q96NY9 551 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 BPESC1Q9GZL8 116 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 EMC3Q9P0I2 261 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 SAR1BQ9Y6B6 198 aa12.48□□□□□ -0.41
PRPF40A-211ENST00000493468 A0A1W2PNR3 127 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 CCT8L1PA6NM43 557 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 VENTXO95231 258 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 NUDT14O95848 222 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 TACSTD2P09758 323 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 PCMT1P22061 227 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 PLTPP55058 493 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 SNRPD2P62316 118 aaKnown RBP12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 MRPS25P82663 173 aaKnown RBP12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 HSPB3Q12988 150 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 GABRA6Q16445 453 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 DUSP5Q16690 384 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF678Q5SXM1 525 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 C3orf33Q6P1S2 294 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 CBLN3Q6UW01 205 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 UGT2A3Q6UWM9 527 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF551Q7Z340 670 aaPredicted RBP12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 C17orf78Q8N4C9 275 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 SLC16A11Q8NCK7 471 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 NUP43Q8NFH3 380 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 PHOSPHO1Q8TCT1 267 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 GPR119Q8TDV5 335 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 APH1AQ96BI3 265 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 IQCGQ9H095 443 aaKnown RBP12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 ASB6Q9NWX5 421 aa12.47□□□□□ -0.41
PRPF40A-211ENST00000493468 TMEM89A2RUT3 159 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 C9JVG2 144 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 PDPK1O15530 556 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 RAD51CO43502 376 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 SUPT7LO94864 414 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 GIFP27352 417 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 GPC1P35052 558 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 CHN2P52757 468 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 PKNOX1P55347 436 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 BTKQ06187 659 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 TOMM34Q15785 309 aaPredicted RBP12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 UNC50Q53HI1 259 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 UBE2J2Q8N2K1 259 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 C3orf56Q8N813 242 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 COX18Q8N8Q8 333 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 LINC01356Q8N9X3 169 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF527Q8NB42 609 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 C1orf162Q8NEQ5 155 aaPredicted RBP12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ATP6V1C2Q8NEY4 427 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ZFP28Q8NHY6 868 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ARL8AQ96BM9 186 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF775Q96BV0 537 aaPredicted RBP12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 FBXO17Q96EF6 278 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 BTBD2Q9BX70 525 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 HOXD1Q9GZZ0 328 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 ACSS3Q9H6R3 686 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 METRNQ9UJH8 293 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 AMDHD2Q9Y303 409 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 TRAF6Q9Y4K3 522 aa12.46□□□□□ -0.41
PRPF40A-211ENST00000493468 A0A1W2PR80 420 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 FAM157AC9JC47 383 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 ATP6V1G2-DDX39BF2Z307 99 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 H3BNH8 94 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 PDLIM1O00151 329 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 OIP5O43482 229 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 H6PDO95479 791 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 IGHV3-9P01782 118 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 ITGA5P08648 1049 aa12.45□□□□□ -0.42
PRPF40A-211ENST00000493468 ALOX5P09917 674 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms