RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 OR7G1Q8NGA0 311 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 PTPMT1Q8WUK0 201 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 OTULINQ96BN8 352 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 IFT27Q9BW83 186 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 JAM3Q9BX67 310 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 NUAK2Q9H093 628 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 TXNL4BQ9NX01 149 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 SF3B6Q9Y3B4 125 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 MMACHCQ9Y4U1 282 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 A0A075B6Q4 140 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 A0A1B0GVT2 93 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 SERINC4A6NH21 518 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 DUX1O43812 170 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 HCN1O60741 890 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 ALAS2P22557 587 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 CSF2RBP32927 897 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 CXCL12P48061 93 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 ARL4DP49703 201 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 RPS25P62851 125 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 FOXK2Q01167 660 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 CADM2Q8N3J6 435 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 SIRT6Q8N6T7 355 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 OR1L3Q8NH93 324 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 UFD1Q92890 307 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 YIPF2Q9BWQ6 316 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 BARHL1Q9BZE3 327 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 DUSP15Q9H1R2 295 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 MED20Q9H944 212 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 SIAEQ9HAT2 523 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 CMC2Q9NRP2 79 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 YARS2Q9Y2Z4 477 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 PNMA8CA0A1B0GUJ8 204 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 SYNDIG1LA6NDD5 238 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 J3QRE1 110 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 GIMD1P0DJR0 217 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF45Q02386 682 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PLK5Q496M5 336 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 WDR45BQ5MNZ6 344 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 SNAP47Q5SQN1 464 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 ULK3Q6PHR2 472 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 MED25Q71SY5 747 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PLXDC1Q8IUK5 500 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF321PQ8N8H1 164 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PSD4Q8NDX1 1056 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 OR51A7Q8NH64 312 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 TMEM203Q969S6 136 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 MVB12AQ96EY5 273 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 SENP5Q96HI0 755 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 OR1F2PQ96R84 312 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 LMF1Q96S06 567 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 KCNS3Q9BQ31 491 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 HCAR1Q9BXC0 346 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 ERVK13-1Q9NX77 482 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 TNFRSF10DQ9UBN6 386 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 EFCAB7A8K855 629 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PLD2O14939 933 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 LALBAP00709 142 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 CSTAP01040 98 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 DCNP07585 359 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 MYF5P13349 255 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 GLB1P16278 677 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 FHL1Q13642 323 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PRAMEF17Q5VTA0 474 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 MEPCEQ7L2J0 689 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PARP16Q8N5Y8 322 aa19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 Q8N9G6 341 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 SECISBP2Q96T21 854 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 PNO1Q9NRX1 252 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 DHCR7Q9UBM7 475 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-208ENST00000492980 MN1Q10571 1320 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 FAM86C2PA6NEL3 165 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 LRRTM2O43300 516 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 PRKNO60260 465 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 UPK1BO75841 260 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 ATP6V1E1P36543 226 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 ETV6P41212 452 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 SLC37A1P57057 533 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 PRPF38BQ5VTL8 546 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 B3GLCTQ6Y288 498 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 D2HGDHQ8N465 521 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 KLHL36Q8N4N3 616 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 OR51G2Q8NGK0 314 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 TSLPQ969D9 159 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 NACC2Q96BF6 587 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 EFHD2Q96C19 240 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 PPP1R14BQ96C90 147 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 SEMA5BQ9P283 1151 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 RPS6KB2Q9UBS0 482 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 NUP210LQ5VU65 1888 aa19.41■□□□□ 0.7
CCDC88B-208ENST00000492980 IGKV3D-11A0A0A0MRZ8 115 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 ZC3H12DA2A288 527 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 CRYZQ08257 329 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF791Q3KP31 576 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 KLHL26Q53HC5 615 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 OAFQ86UD1 273 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 GATAD2AQ86YP4 633 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 MINDY2Q8NBR6 621 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 OR52N1Q8NH53 320 aa19.4■□□□□ 0.7
CCDC88B-208ENST00000492980 SNRNP27Q8WVK2 155 aaKnown RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms