RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	C12orf43	Q96C57	262 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ISOC1	Q96CN7	298 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FAF2	Q96CS3	445 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	COQ8B	Q96D53	544 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FRG2B	Q96QU4	278 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	EBNA1BP2	Q99848	306 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PSD2	Q9BQI7	771 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	RTP3	Q9BQQ7	232 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	EBF4	Q9BQW3	602 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NEURL2	Q9BR09	285 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NAT9	Q9BTE0	207 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	C1QTNF5	Q9BXJ0	243 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MRO	Q9BYG7	248 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	STRADB	Q9C0K7	418 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ILKAP	Q9H0C8	392 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	DEFB129	Q9H1M3	183 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PPIL3	Q9H2H8	161 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ASB8	Q9H765	288 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	AAMDC	Q9H7C9	122 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MTHFD2L	Q9H903	347 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	C12orf10	Q9HB07	376 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	POPDC2	Q9HBU9	364 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC38A7	Q9NVC3	462 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	TAS2R7	Q9NYW3	318 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC9A2	Q9UBY0	812 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	MARCO	Q9UEW3	520 aa	Predicted RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	PISD	Q9UG56	409 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	APOBEC3B	Q9UH17	382 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	NAGK	Q9UJ70	344 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF229	Q9UJW7	825 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	UTS2R	Q9UKP6	389 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	VANGL2	Q9ULK5	521 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FLVCR2	Q9UPI3	526 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	FOXJ3	Q9UPW0	622 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	LAMP3	Q9UQV4	416 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	ERGIC3	Q9Y282	383 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	EXOG	Q9Y2C4	368 aa	Known RBP	4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	RNF11	Q9Y3C5	154 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592	CROCC	Q5TZA2	2017 aa		4.36	□□□□□ -1.71
RTN4-215	ENST00000491592		A0A087X0K7	114 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TRBV5-3	A0A0A0MS03	114 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592		A0A0G2JK05	382 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	BCLAF3	A2AJT9	711 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	METTL21EP	A6NDL7	271 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SERPINE3	A8MV23	424 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592		F8VP50	259 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592		H7C0C1	242 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	FOXE1	O00358	373 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CYB561D2	O14569	222 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TOR1A	O14656	332 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ACOT8	O14734	319 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC16A4	O15374	487 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PSMD3	O43242	534 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SCN2B	O60939	215 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GMNN	O75496	209 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CPNE6	O95741	557 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TOP3B	O95985	862 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GSR	P00390	522 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MT-ND2	P03891	347 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	HMGN1	P05114	100 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SFTPB	P07988	381 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ANKRD34C	P0C6C1	535 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	DANCR	P0C864	163 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GSTT2	P0CG29	244 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GSTT2B	P0CG30	244 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GNS	P15586	552 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	XRCC1	P18887	633 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TNNI1	P19237	187 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RAB4A	P20338	218 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PSMB6	P28072	239 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PTGER1	P34995	402 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	HMGCL	P35914	325 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MAGEA3	P43357	314 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	EIF2B2	P49770	351 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	NUDT2	P50583	147 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	EMP2	P54851	167 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TMBIM6	P55061	237 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PEX3	P56589	373 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	POLR2L	P62875	67 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MRPS22	P82650	360 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CDKL1	Q00532	357 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC25A11	Q02978	314 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CDH17	Q12864	832 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PMS2P3	Q13401	168 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KLF9	Q13886	244 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF846	Q147U1	533 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PDK2	Q15119	407 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PSG3	Q16557	428 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KYAT1	Q16773	422 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TRIM16L	Q309B1	348 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ALKBH6	Q3KRA9	238 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ALG10	Q5BKT4	473 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC25A53	Q5H9E4	307 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ALG10B	Q5I7T1	473 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	C10orf25	Q5T742	122 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	AGAP6	Q5VW22	663 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM220	Q6QAJ8	160 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	FIGLA	Q6QHK4	219 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms