RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NCF1BA6NI72 391 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MPTX1A8MV57 137 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NCF1CA8MVU1 366 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 C2orf74A8MZ97 194 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 F8W036 122 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 H7C0S8 307 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GPR171O14626 319 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 DNALI1O14645 258 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PTGESO14684 152 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BET1O15155 118 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CLDN3O15551 220 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CHMP2AO43633 222 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SCO2O43819 266 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 KERAO60938 352 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ENTPD5O75356 428 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PALMO75781 387 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CEACAM4O75871 244 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SULT1C4O75897 302 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MYO1DO94832 1006 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SNAPINO95295 136 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CHRNA1P02708 482 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SHBGP04278 402 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 IFNA16P05015 189 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 FABP1P07148 127 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PGK2P07205 417 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ADRB2P07550 413 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ASNSP08243 561 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 HBQ1P09105 142 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 QDPRP09417 244 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GNAO1P09471 354 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 HMOX1P09601 288 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 OR52Z1P0C646 297 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 UBTFL1P0CB47 393 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CLUP10909 449 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SLC2A3P11169 496 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 IFNAR1P17181 557 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ARF4P18085 180 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TNNI1P19237 187 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CTNNA2P26232 953 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PIK3R1P27986 724 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RBMS1P29558 406 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CCND2P30279 289 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TLX1P31314 330 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CCR1P32246 355 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TALDO1P37837 337 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SOX3P41225 446 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RPL35P42766 123 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PTGER3P43115 390 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BTDP43251 543 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 OR3A2P47893 321 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GNG10P50151 68 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CAPZA1P52907 286 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ATXN3P54252 364 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MFAP3P55082 362 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 C21orf59P57076 290 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SLC26A5P58743 744 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 STARD6P59095 220 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ACTR3P61158 418 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 STX1BP61266 288 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ATP6V0D1P61421 351 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TSPAN5P62079 268 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 IRX4P78413 519 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 DLK1P80370 383 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SEMG2Q02383 582 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF45Q02386 682 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SLC34A1Q06495 639 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RAD51Q06609 339 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RASGEF1BQ0VAM2 473 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RIGQ13278 110 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF177Q13360 481 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TFDP1Q14186 410 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CAPRIN1Q14444 709 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MORF4L2Q15014 288 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TRADDQ15628 312 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 FAM189A2Q15884 450 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 IGFBP7Q16270 282 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 EXT1Q16394 746 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF239Q16600 458 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 AANATQ16613 207 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MS4A18Q3C1V0 323 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GPR33Q49SQ1 333 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 HIGD2BQ4VC39 106 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TNFAIP8L3Q5GJ75 292 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TCP11X2Q5H9J9 407 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC73Q5JTD7 316 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BRMS1LQ5PSV4 323 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 THEM4Q5T1C6 240 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ATF7IP2Q5U623 682 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 FKBP1CQ5VVH2 108 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SULT1C3Q6IMI6 304 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 FUT10Q6P4F1 479 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ERICH5Q6P6B1 374 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 DHRS4L2Q6PKH6 230 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 DEGS2Q6QHC5 323 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ARSKQ6UWY0 536 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC74BQ6ZQY2 392 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 STOX1Q6ZVD7 989 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GPRIN3Q6ZVF9 776 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ASRGL1Q7L266 308 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CHST3Q7LGC8 479 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms