RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PAQR6Q6TCH4 344 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 QSOX2Q6ZRP7 698 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 ZSCAN1Q8NBB4 408 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 AGBL5Q8NDL9 886 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 C16orf52Q8NHV5 167 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF578Q96N58 590 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 PTCHD1Q96NR3 888 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 PELOQ9BRX2 385 aaKnown RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 UCK2Q9BZX2 261 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 FKBP14Q9NWM8 211 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 KLHL28Q9NXS3 571 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF232Q9UNY5 417 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 GVINP1Q7Z2Y8 2422 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 TEX51A0A1B0GUA7 166 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CPSF4LA6NMK7 179 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 ZAR1LA6NP61 321 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 POLR1CO15160 346 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 OR10H3O60404 316 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PRAMEF2O60811 474 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 NID1P14543 1247 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CHMP24386 653 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 NBL1P41271 181 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PGDP52209 483 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 TAS2R41P59536 307 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 STPG1Q5TH74 334 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 FAM69BQ5VUD6 431 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 TMEM53Q6P2H8 277 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 DHRS13Q6UX07 377 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 ZER1Q7Z7L7 766 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 OR4K5Q8NGD3 323 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 WDR36Q8NI36 951 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PTPMT1Q8WUK0 201 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 NR4A3Q92570 626 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 MCHR1Q99705 422 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 OR10A5Q9H207 317 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 EXOSC4Q9NPD3 245 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PCDHGA3Q9Y5H0 932 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PNMA8CA0A1B0GUJ8 204 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 A6NL46 340 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 ENTPD6O75354 484 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 SOX30O94993 753 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 APOL3O95236 402 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 IFNA16P05015 189 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CT45A8P0DMV1 189 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CT45A9P0DMV2 189 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 AZGP1P25311 298 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 RNF144AP50876 292 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CRISP1P54107 249 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 UGT2B15P54855 530 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 BIKQ13323 160 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 SSX1Q16384 188 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 EIPR1Q53HC9 387 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 CT45A2Q5DJT8 189 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 ENTPD8Q5MY95 495 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 MRPL2Q5T653 305 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 FAM199XQ6PEV8 388 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 PTCHD4Q6ZW05 846 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 USP43Q70EL4 1123 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 COX15Q7KZN9 410 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 IQCF1Q8N6M8 205 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF321PQ8N8H1 164 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 TRMT61AQ96FX7 289 aaKnown RBP11.21□□□□□ -0.61
HDAC6-230ENST00000488543 GPA33Q99795 319 aa11.21□□□□□ -0.61
HDAC6-230ENST00000488543 DCHS1Q96JQ0 3298 aa11.21□□□□□ -0.62
HDAC6-230ENST00000488543 A0A087WUU8 490 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 HTR3EA5X5Y0 456 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 CDHR4A6H8M9 788 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 A8MUA0 341 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 C17orf105B2RV13 164 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 GPX5O75715 221 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 CCNYL3P0C7X3 344 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 OSMP13725 252 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 PRG2P13727 222 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 MMP11P24347 488 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ETV5P41161 510 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 TRAM2Q15035 370 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ZNHIT3Q15649 155 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 TRIP6Q15654 476 aaKnown RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ZMAT1Q5H9K5 638 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 SLC35B4Q969S0 331 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 MMP27Q9H306 513 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 CACYBPQ9HB71 228 aaKnown RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 A8MV72 311 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 NPIPB9F8W1W9 429 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 AP3D1O14617 1153 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 SNPHO15079 494 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 RFPL3O75679 317 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 OR5F1O95221 314 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 LYPD3O95274 346 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 HTR2AP28223 471 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ILKQ13418 452 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 TRA2AQ13595 282 aaKnown RBP eCLIP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 SF3B4Q15427 424 aaKnown RBP eCLIP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 CLPPQ16740 277 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 NKAIN1Q4KMZ8 207 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 FLYWCH1Q4VC44 716 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 FAAH2Q6GMR7 532 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 C1orf94Q6P1W5 598 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 CD300LDQ6UXZ3 194 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms