RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 LRFN1Q9P244 771 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 OAZ3Q9UMX2 235 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CARD8Q9Y2G2 431 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 KLF13Q9Y2Y9 288 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 TESMINQ9Y4I5 508 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 KCNMB2Q9Y691 235 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 DOCK10Q96BY6 2186 aa9.27□□□□□ -0.92
USP39-215ENST00000481409 C7orf72A4D263 438 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 CPSF4LA6NMK7 179 aaKnown RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 J3KTA2 159 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ADAM10O14672 748 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 SCO2O43819 266 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TPST2O60704 377 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 SEMA7AO75326 666 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 BCAS1O75363 584 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 ADAP00813 363 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 GKN3PP0CG01 181 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 GP1BBP13224 206 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 CD46P15529 392 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF26P17031 533 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 WT1P19544 449 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 ITPKBP27987 946 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 CD96P40200 585 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 APOBEC1P41238 236 aaKnown RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF41P51814 821 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 RAD23AP54725 363 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TMPRSS3P57727 454 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 PPP2R2BQ00005 443 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 OC90Q02509 493 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 PLAURQ03405 335 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 DAG1Q14118 895 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 COL28A1Q2UY09 1125 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 SLC25A53Q5H9E4 307 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ALG10BQ5I7T1 473 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 B3GNTL1Q67FW5 361 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 FCRLBQ6BAA4 426 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 IGFL3Q6UXB1 125 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 CD300LDQ6UXZ3 194 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 LINC00114Q6XXX2 140 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 GRINAQ7Z429 371 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 GDF7Q7Z4P5 450 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 HMGN2P46Q86SG4 172 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 PLCZ1Q86YW0 608 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 RBM45Q8IUH3 476 aaKnown RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 TMCO5AQ8N6Q1 288 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 FADS6Q8N9I5 356 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TMEM178AQ8NBL3 297 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 OR5M3Q8NGP4 307 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 OR1J4Q8NGS1 313 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF563Q8TA94 476 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 GPR119Q8TDV5 335 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZBTB8AQ96BR9 441 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 NAF1Q96HR8 494 aaKnown RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 MRGPRX4Q96LA9 322 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF597Q96LX8 424 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 CIB1Q99828 191 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 FAM173AQ9BQD7 235 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 FUZQ9BT04 418 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TMEM43Q9BTV4 400 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF426Q9BUY5 554 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 KRTAP3-3Q9BYR6 98 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 KRTAP3-2Q9BYR7 98 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ADAM19Q9H013 955 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ZNF556Q9HAH1 456 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TAS2R10Q9NYW0 307 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 BOKQ9UMX3 212 aaPredicted RBP9.27□□□□□ -0.93
USP39-215ENST00000481409 MGAT4BQ9UQ53 548 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 TMEM5Q9Y2B1 443 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 ORC6Q9Y5N6 252 aa9.27□□□□□ -0.93
USP39-215ENST00000481409 A0A087WUJ7 227 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 A0A087WV48 116 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 A0A1B0GWA3 101 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 SH3PXD2BA1X283 911 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 KLRC4-KLRK1H3BQV0 150 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 LINC01387J3KSC0 135 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 MAN1A2O60476 641 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 TRIM3O75382 744 aaPredicted RBP9.26□□□□□ -0.93
USP39-215ENST00000481409 SLC25A12O75746 678 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 NEURL1O76050 574 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 DIRAS1O95057 198 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 WDPCPO95876 746 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 ITGB2P05107 769 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 ALPLP05186 524 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 PRG2P13727 222 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 GSTM3P21266 225 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 HTR2AP28223 471 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 PEX2P28328 305 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 YAP1P46937 504 aaKnown RBP9.26□□□□□ -0.93
USP39-215ENST00000481409 IDH2P48735 452 aaKnown RBP9.26□□□□□ -0.93
USP39-215ENST00000481409 CCL11P51671 97 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 RPS6KA3P51812 740 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 POLR2HP52434 150 aaKnown RBP9.26□□□□□ -0.93
USP39-215ENST00000481409 DSCR4P56555 118 aaPredicted RBP9.26□□□□□ -0.93
USP39-215ENST00000481409 TLE3Q04726 772 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 MERTKQ12866 999 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 OR1C1Q15619 314 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 EXOC3L2Q2M3D2 409 aa9.26□□□□□ -0.93
USP39-215ENST00000481409 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.26□□□□□ -0.936e-7■□□□□ 9.1
USP39-215ENST00000481409 DEFB109BQ30KR1 87 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms