RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CCDC71LQ8N9Z2 235 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LRRC75AQ8NAA5 344 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 BEST2Q8NFU1 509 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 OR51G2Q8NGK0 314 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 OR10J5Q8NHC4 309 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 SPPL2AQ8TCT8 520 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM222BQ8WU58 562 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM239Q8WW34 195 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 PIH1D2Q8WWB5 315 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NELFBQ8WX92 580 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM3CQ92520 227 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 AP3S1Q92572 193 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 FRAT1Q92837 279 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 OMA1Q96E52 524 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 HPDLQ96IR7 371 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 VSTM2LQ96N03 204 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF570Q96NI8 536 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 SERPINB11Q96P15 392 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 KLHDC3Q9BQ90 382 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TTYH2Q9BSA4 534 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 FUCA2Q9BTY2 467 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MCRIP2Q9BUT9 160 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TSSK1BQ9BXA7 367 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ERVK-6Q9BXR3 956 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MAP1LC3CQ9BXW4 147 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ACTL8Q9H568 366 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 PPP1R3EQ9H7J1 279 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TXNRD2Q9NNW7 524 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 INIPQ9NRY2 104 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NECAP2Q9NVZ3 263 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 STOML2Q9UJZ1 356 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF346Q9UL40 294 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 EMCNQ9ULC0 261 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MMACHCQ9Y4U1 282 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 YIPF1Q9Y548 306 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 PRDM2Q13029 1718 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SNED1Q8TER0 1413 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ATP10DQ9P241 1426 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SH3PXD2BA1X283 911 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PRSS37A4D1T9 235 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PRSS46E5RG02 174 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 AQP9O43315 295 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 XRCC2O43543 280 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 LDB3O75112 727 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 B3GAT3O94766 335 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ETHE1O95571 254 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CRYZL1O95825 349 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ACTL6AO96019 429 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GSTT2P0CG29 244 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GSTT2BP0CG30 244 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SAGP10523 405 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ENO3P13929 434 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 EPCAMP16422 314 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PGAM1P18669 254 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 XRCC1P18887 633 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FCARP24071 287 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GTF2E2P29084 291 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 RBMS1P29558 406 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 EIF2S3P41091 472 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PPP3CCP48454 512 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CDK9P50750 372 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ACLYP53396 1101 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 HSPA2P54652 639 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ERVFC1-1P60608 527 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PSME3P61289 254 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 KLC1Q07866 573 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ORC2Q13416 577 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GANABQ14697 944 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 TNXAQ16473 311 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PTGISQ16647 500 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 MEP1AQ16819 746 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ZSWIM7Q19AV6 140 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 TCTN1Q2MV58 587 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF528Q3MIS6 628 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 COX19Q49B96 90 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ACCSLQ4AC99 568 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 AKIRIN2Q53H80 203 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 C1orf146Q5VVC0 180 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SUSD4Q5VX71 490 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM166AQ6J272 317 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 REEP3Q6NUK4 255 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 UGT3A1Q6NUS8 523 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM71F2Q6NXP2 309 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GSG1LQ6UXU4 331 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 C3orf62Q6ZUJ4 267 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CREB3L2Q70SY1 520 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 DPPA4Q7L190 304 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 P4HA3Q7Z4N8 544 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CRLF3Q8IUI8 442 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 MMAAQ8IVH4 418 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM71AQ8IYT1 594 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 TDHQ8IZJ6 230 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ELMOD1Q8N336 334 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CSNK1A1LQ8N752 337 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 LRRC57Q8N9N7 239 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ACBD4Q8NC06 268 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 OR5B17Q8NGF7 314 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 OR5T2Q8NGG2 359 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms