RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 GPR68Q15743 365 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 FAM174BQ3ZCQ3 159 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 SLC25A53Q5H9E4 307 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 SPANXN4Q5MJ08 99 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 PDZK1Q5T2W1 519 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 HEPHL1Q6MZM0 1159 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 STK32CQ86UX6 486 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 ANKRD46Q86W74 232 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CLEC4FQ8N1N0 589 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CKAP2Q8WWK9 683 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CPNE4Q96A23 557 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-207ENST00000467985 NEURL3Q96EH8 262 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 MAGEB18Q96M61 343 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CCDC115Q96NT0 180 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 WFIKKN1Q96NZ8 548 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 KLHDC3Q9BQ90 382 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 ZNF350Q9GZX5 532 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 LAT2Q9GZY6 243 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 OR51I1Q9H343 314 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 BTNL2Q9UIR0 455 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 C2CD3Q4AC94 2353 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 ETV2O00321 342 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 SDHDO14521 159 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 POLR3GO15318 223 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 FCMRO60667 390 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 ATE1O95260 518 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 PPP3CBP16298 524 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 CHI3L1P36222 383 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 KHKP50053 298 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 RNF144AP50876 292 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 CCR4P51679 360 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 PHC1P78364 1004 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 TXNL4AP83876 142 aaKnown RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 GUCY1A3Q02108 690 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 SELENBP1Q13228 472 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 RNPS1Q15287 305 aaKnown RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 POU4F3Q15319 338 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 AP1ARQ63HQ0 302 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 SAXO2Q658L1 398 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 EIF3MQ7L2H7 374 aaKnown RBP17.07■□□□□ 0.32
COL7A1-207ENST00000467985 TRIML2Q8N7C3 387 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 RFWD2Q8NHY2 731 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 XAGE5Q8WWM1 108 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 AIG1Q9NVV5 245 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 KLHL28Q9NXS3 571 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 MKLN1Q9UL63 735 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 ZFHX3Q15911 3703 aa17.07■□□□□ 0.32
COL7A1-207ENST00000467985 KLF11O14901 512 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 EFNA2O43921 213 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 DNAJA2O60884 412 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 NTN1O95631 604 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 CSTAP01040 98 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 OR12D1P0DN82 309 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 CRYGSP22914 178 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 ANXA11P50995 505 aaKnown RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 SKP2Q13309 424 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 QPRTQ15274 297 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 TOMM34Q15785 309 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 ZNF239Q16600 458 aaKnown RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 EXOC3L2Q2M3D2 409 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 NDUFAF6Q330K2 333 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 TMEM176BQ3YBM2 270 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 BEND4Q6ZU67 534 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 GLB1L3Q8NCI6 653 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 ST8SIA1Q92185 356 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 ZBTB18Q99592 522 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 SLC35A5Q9BS91 424 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 GP6Q9HCN6 339 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 MARCOQ9UEW3 520 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-207ENST00000467985 CLEC4AQ9UMR7 237 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 WDR45Q9Y484 360 aa17.06■□□□□ 0.32
COL7A1-207ENST00000467985 PRRC2AP48634 2157 aaKnown RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 KIAA0513O60268 411 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 UGT2B17O75795 530 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 ALDOCP09972 364 aaKnown RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 EPHA3P29320 983 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 SLC7A1P30825 629 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 CCKARP32238 428 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 MDH1P40925 334 aaKnown RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 RIPPLY3P57055 190 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 HPCAP84074 193 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 TNFAIP8L2Q6P589 184 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 TGIF2LYQ8IUE0 185 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 RNF128Q8TEB7 428 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 ZFP90Q8TF47 636 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 TMEM234Q8WY98 164 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 ROPN1LQ96C74 230 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 TACO1Q9BSH4 297 aaKnown RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 KLHL4Q9C0H6 718 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 SAP130Q9H0E3 1048 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 KCNE5Q9UJ90 142 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 SLC35A3Q9Y2D2 325 aa17.05■□□□□ 0.32
COL7A1-207ENST00000467985 ZNF469Q96JG9 3925 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-207ENST00000467985 PRKD3O94806 890 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 PGRP06401 933 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 NID1P14543 1247 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 IDO1P14902 403 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 PGCP20142 388 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 SHC1P29353 583 aa17.04■□□□□ 0.32
COL7A1-207ENST00000467985 AGTR1P30556 359 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms