RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CDK5Q00535 292 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 HES3Q5TGS1 186 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 FOXB2Q5VYV0 432 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 CBLN3Q6UW01 205 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 CASP12Q6UXS9 341 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 C16orf47Q6ZP98 133 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 PTCHD4Q6ZW05 846 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 CDK20Q8IZL9 346 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 CLDN22Q8N7P3 220 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 ELP5Q8TE02 316 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 THAP3Q8WTV1 239 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 TBL1XR1Q9BZK7 514 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 EGLN3Q9H6Z9 239 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SLC25A19Q9HC21 320 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 ZBTB20Q9HC78 741 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 IL20Q9NYY1 176 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 MYOTQ9UBF9 498 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 HS3ST3B1Q9Y662 390 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 EP300Q09472 2414 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 CDC42EP2O14613 210 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 OIP5O43482 229 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 NDUFB5O43674 189 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 IGHEP01854 428 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 HTR1AP08908 422 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 RAB40ALP0C0E4 278 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 EVI2BP34910 448 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SLC6A8P48029 635 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SMSP52788 366 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SNRPGP62308 76 aaKnown RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 GINS1Q14691 196 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 TMEM164Q5U3C3 297 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 WBP2NLQ6ICG8 309 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 KCTD8Q6ZWB6 473 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 TMPRSS11FQ6ZWK6 438 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 TIPARPQ7Z3E1 657 aaKnown RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 MARCH3Q86UD3 253 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 PFN4Q8NHR9 129 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 TEX47Q8TBZ9 253 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SGCDQ92629 289 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 OSTF1Q92882 214 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 BPIFA2Q96DR5 249 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 IMMP1LQ96LU5 166 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 NODALQ96S42 347 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 PLA2G12AQ9BZM1 189 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 RTN4RQ9BZR6 473 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 DSN1Q9H410 356 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 MEPEQ9NQ76 525 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 C20orf141Q9NUB4 165 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 A0A1W2PQ72 361 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 WWP2O00308 870 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 EIF4E2O60573 245 aaKnown RBP13.05□□□□□ -0.32
USP39-207ENST00000450066 ZNF354AO60765 605 aaPredicted RBP13.05□□□□□ -0.32
USP39-207ENST00000450066 FAM20BO75063 409 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 NADKO95544 446 aaPredicted RBP13.05□□□□□ -0.32
USP39-207ENST00000450066 COX6A1P12074 109 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 IFI30P13284 250 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 NBL1P41271 181 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 EXT1Q16394 746 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 SLC27A4Q6P1M0 643 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 ZNF620Q6ZNG0 422 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 SPARTQ8N0X7 666 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 TMCO5AQ8N6Q1 288 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 ZNF540Q8NDQ6 660 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 OR8J1Q8NGP2 316 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 IPCEF1Q8WWN9 437 aaPredicted RBP13.05□□□□□ -0.32
USP39-207ENST00000450066 C3orf49Q96BT1 292 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 CCNL2Q96S94 520 aaPredicted RBP13.05□□□□□ -0.32
USP39-207ENST00000450066 LRFN3Q9BTN0 628 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 DEFB126Q9BYW3 111 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 CCNB1IP1Q9NPC3 277 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 ZNF292O60281 2723 aa13.05□□□□□ -0.32
USP39-207ENST00000450066 A0A087WUJ7 227 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 SH3D21A4FU49 640 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 UNC119BA6NIH7 251 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 M0R129 80 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 MRPS14O60783 128 aaKnown RBP13.04□□□□□ -0.32
USP39-207ENST00000450066 TCN2P20062 427 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 MAKP20794 623 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 PTNP21246 168 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 CCR4P51679 360 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 ZNF117Q03924 483 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 BTBD16Q32M84 506 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 PLAG1Q6DJT9 500 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 MRGPREQ86SM8 312 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 IQCF1Q8N6M8 205 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 OR8D4Q8NGM9 314 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 PHOX2BQ99453 314 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 COL25A1Q9BXS0 654 aaPredicted RBP13.04□□□□□ -0.32
USP39-207ENST00000450066 POLDIP3Q9BY77 421 aaKnown RBP13.04□□□□□ -0.32
USP39-207ENST00000450066 DPH1Q9BZG8 443 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 IRF2BPLQ9H1B7 796 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 VCX3AQ9NNX9 186 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 CLN6Q9NWW5 311 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 CDH10Q9Y6N8 788 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 PCNX2A6NKB5 2137 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 KPNA4O00629 521 aaPredicted RBP13.04□□□□□ -0.32
USP39-207ENST00000450066 HCRTR2O43614 444 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 PNMTP11086 282 aa13.04□□□□□ -0.32
USP39-207ENST00000450066 TMED10P49755 219 aaKnown RBP13.04□□□□□ -0.32
USP39-207ENST00000450066 ACSM5Q6NUN0 579 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms