RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 FNDC11Q9BVV2 318 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 ADAM19Q9H013 955 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 REEP1Q9H902 201 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 MAN2C1Q9NTJ4 1040 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 DEPPQ9NTK1 212 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 VNN3Q9NY84 501 aa12.98□□□□□ -0.33
SF3B1-204ENST00000414963 KLF13Q9Y2Y9 288 aaPredicted RBP12.98□□□□□ -0.33
SF3B1-204ENST00000414963 A0A0B4J2E0 115 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 A0A1B0GWA3 101 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 A0A1B0GX12 115 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 CPSF4LA6NMK7 179 aaKnown RBP12.97□□□□□ -0.33
SF3B1-204ENST00000414963 GNGT2O14610 69 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 F10P00742 488 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 THY1P04216 161 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 RRM2P31350 389 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 DNAJA1P31689 397 aaKnown RBP12.97□□□□□ -0.33
SF3B1-204ENST00000414963 RYKP34925 604 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 SLC1A3P43003 542 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 IDH2P48735 452 aaKnown RBP12.97□□□□□ -0.33
SF3B1-204ENST00000414963 TAS2R41P59536 307 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 COPZ1P61923 177 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 FOXO1Q12778 655 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 TRAM2Q15035 370 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 SLC25A53Q5H9E4 307 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 OR5M10Q6IEU7 315 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 ULK3Q6PHR2 472 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 LINC00114Q6XXX2 140 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 PLEKHM3Q6ZWE6 761 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 GDF7Q7Z4P5 450 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 TMCO5AQ8N6Q1 288 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 ST8SIA1Q92185 356 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 TM9SF4Q92544 642 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 ZNF524Q96C55 264 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 SLC41A3Q96GZ6 507 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 KLHDC3Q9BQ90 382 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 DSN1Q9H410 356 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 C12orf10Q9HB07 376 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 MED11Q9P086 117 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 STOML1Q9UBI4 398 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 NTNG1Q9Y2I2 539 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 TESMINQ9Y4I5 508 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 HRH3Q9Y5N1 445 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 LYVE1Q9Y5Y7 322 aa12.97□□□□□ -0.33
SF3B1-204ENST00000414963 A0A087WZY1 265 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 A0A0G2JMM0 328 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 A0A1W2PPB8 328 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 A0A1W2PRS3 328 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 KIR3DP1A8MWS1 328 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 MKRN2OSH3BPM6 223 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 TNFRSF11BO00300 401 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 CBR3O75828 277 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 GADD45GO95257 159 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 FPR1P21462 350 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 MST1P26927 711 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 CCR4P51679 360 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SPIBQ01892 262 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 GANABQ14697 944 aaKnown RBP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 INPP5JQ15735 1006 aaPredicted RBP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SHQ1Q6PI26 577 aaKnown RBP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SVOPLQ8N434 492 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 ZADH2Q8N4Q0 377 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 TMEM178AQ8NBL3 297 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 OR2M7Q8NG81 312 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 OR1J4Q8NGS1 313 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 OR5K1Q8NHB7 308 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 TMEM234Q8WY98 164 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SLC38A4Q969I6 547 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 C1GALT1C1Q96EU7 318 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 MPP4Q96JB8 637 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 ZNF597Q96LX8 424 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 C5orf34Q96MH7 638 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 PRSS27Q9BQR3 290 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SEMA6AQ9H2E6 1030 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 PTGES2Q9H7Z7 377 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 ZFP64Q9NPA5 681 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 RHCGQ9UBD6 479 aa12.96□□□□□ -0.33
SF3B1-204ENST00000414963 MRPS18CQ9Y3D5 142 aaKnown RBP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 SAMHD1Q9Y3Z3 626 aaKnown RBP12.96□□□□□ -0.33
SF3B1-204ENST00000414963 CELSR3Q9NYQ7 3312 aa12.96□□□□□ -0.34
SF3B1-204ENST00000414963 PTPRQQ9UMZ3 2332 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 TRAV17A0A0B4J275 112 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 C7orf72A4D263 438 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 LRRC3CA6NJW4 275 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 G3V3Y1 287 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 KLRC4-KLRK1H3BQV0 150 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 CHP2O43745 196 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 PEX1O43933 1283 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 CDC40O60508 579 aaKnown RBP eCLIP12.95□□□□□ -0.34
SF3B1-204ENST00000414963 NTN1O95631 604 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 PNMTP11086 282 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 GP1BBP13224 206 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 FUT4P22083 530 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 HTR3AP46098 478 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 MASP1P48740 699 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 DNASE1L1P49184 302 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 CDH12P55289 794 aa12.95□□□□□ -0.34
SF3B1-204ENST00000414963 DSCR4P56555 118 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-204ENST00000414963 SESN3P58005 492 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms