RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SSR3Q9UNL2 185 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 MMACHCQ9Y4U1 282 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 VCANP13611 3396 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 ZNF670-ZNF695F2Z2N8 137 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 IGHA1P01876 353 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 ATXN8OSP0DMR3 200 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 CSF2RBP32927 897 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 RPS19P39019 145 aaKnown RBP18.53■□□□□ 0.56
USP39-204ENST00000409766 ARL4DP49703 201 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 PLBD1Q6P4A8 553 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 LHFPL3Q86UP9 236 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 LAPTM4BQ86VI4 370 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 D2HGDHQ8N465 521 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 OR1L3Q8NH93 324 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 MROQ9BYG7 248 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 SIAEQ9HAT2 523 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 SEMA5BQ9P283 1151 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 SEC16AO15027 2179 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 ARID1BQ8NFD5 2236 aaPredicted RBP18.53■□□□□ 0.56
USP39-204ENST00000409766 CABIN1Q9Y6J0 2220 aa18.53■□□□□ 0.56
USP39-204ENST00000409766 TRAV27A0A087WT01 109 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 SERINC4A6NH21 518 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 CBFA2T3O75081 653 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 TSPAN19P0C672 248 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 CD79BP40259 229 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 SLC37A1P57057 533 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 DSG2Q14126 1118 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 SLC35F1Q5T1Q4 408 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 ULK3Q6PHR2 472 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 KIRREL2Q6UWL6 708 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 GID4Q8IVV7 300 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 DEFB123Q8N688 67 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 YIPF2Q9BWQ6 316 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 JAM3Q9BX67 310 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 QPCTLQ9NXS2 382 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 DHCR7Q9UBM7 475 aaKnown RBP18.52■□□□□ 0.56
USP39-204ENST00000409766 PEX16Q9Y5Y5 336 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 HEATR5AQ86XA9 2040 aa18.52■□□□□ 0.56
USP39-204ENST00000409766 IGKV3D-11A0A0A0MRZ8 115 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 J3QRE1 110 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 HCN1O60741 890 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 CSTAP01040 98 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 MYF5P13349 255 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 S100A5P33763 92 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 FOXK2Q01167 660 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 ZP2Q05996 745 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 FHL1Q13642 323 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 OXA1LQ15070 435 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 NDUFAF6Q330K2 333 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 SNAP47Q5SQN1 464 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 PERM1Q5SV97 790 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 PRAMEF17Q5VTA0 474 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 NIPAL3Q6P499 406 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 CADM2Q8N3J6 435 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 ZNF321PQ8N8H1 164 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 Q8N9G6 341 aaPredicted RBP18.52■□□□□ 0.55
USP39-204ENST00000409766 OR51A7Q8NH64 312 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 IFT27Q9BW83 186 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 CMC2Q9NRP2 79 aa18.52■□□□□ 0.55
USP39-204ENST00000409766 PNO1Q9NRX1 252 aaKnown RBP18.52■□□□□ 0.55
USP39-204ENST00000409766 SF3B6Q9Y3B4 125 aaKnown RBP18.52■□□□□ 0.55
USP39-204ENST00000409766 MN1Q10571 1320 aaPredicted RBP18.52■□□□□ 0.55
USP39-204ENST00000409766 SPEGQ15772 3267 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 EFCAB7A8K855 629 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 FOLR1P15328 257 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 GPLD1P80108 840 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 PLK5Q496M5 336 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 KLHL26Q53HC5 615 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 PSD4Q8NDX1 1056 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 OTULINQ96BN8 352 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 SLC41A2Q96JW4 573 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 LMF1Q96S06 567 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 NUAK2Q9H093 628 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 PRDM6Q9NQX0 595 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 TXNL4BQ9NX01 149 aaKnown RBP18.51■□□□□ 0.55
USP39-204ENST00000409766 ERVK13-1Q9NX77 482 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 SIT1Q9Y3P8 196 aa18.51■□□□□ 0.55
USP39-204ENST00000409766 A0A075B6Q4 140 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 FAM86C2PA6NEL3 165 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 PRKNO60260 465 aaPredicted RBP18.5■□□□□ 0.55
USP39-204ENST00000409766 PSMD7P51665 324 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 ZNF45Q02386 682 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 ZNF362Q5T0B9 420 aaPredicted RBP18.5■□□□□ 0.55
USP39-204ENST00000409766 PRPF38BQ5VTL8 546 aaKnown RBP18.5■□□□□ 0.55
USP39-204ENST00000409766 QSOX2Q6ZRP7 698 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 MEPCEQ7L2J0 689 aaKnown RBP18.5■□□□□ 0.55
USP39-204ENST00000409766 OAFQ86UD1 273 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 SIRT6Q8N6T7 355 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 TMEM203Q969S6 136 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 SECISBP2Q96T21 854 aaKnown RBP18.5■□□□□ 0.55
USP39-204ENST00000409766 HCAR1Q9BXC0 346 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 BARHL1Q9BZE3 327 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 MED20Q9H944 212 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 DAPK2Q9UIK4 370 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 RP1P56715 2156 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 ATP6V1E1P36543 226 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 SHBQ15464 509 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 TMEM151BQ8IW70 566 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 UFD1Q92890 307 aa18.5■□□□□ 0.55
USP39-204ENST00000409766 PTP4A1Q93096 173 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms