RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SPACA9Q96E40 222 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 DNAJA3Q96EY1 480 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 THOC3Q96J01 351 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 DHRS1Q96LJ7 313 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 KLHDC3Q9BQ90 382 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ING2Q9H160 280 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 POLR2J3Q9H1A7 115 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 TPRP12270 2363 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 A0A0B4J2E0 115 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 A0A1B0GX12 115 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 A6NL46 340 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 HAX1O00165 279 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TERTO14746 1132 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 BCKDKO14874 412 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 FADS1O60427 444 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 FMO6PO60774 539 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SMNDC1O75940 238 aaKnown RBP eCLIP3.39□□□□□ -1.872e-15■■■□□ 16
RTN4-208ENST00000404909 IGFBP1P08833 259 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 CBLP22681 906 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CD82P27701 267 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 IFNGR2P38484 337 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PSPHP78330 225 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 RPP38P78345 283 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 OC90Q02509 493 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 EPS8Q12929 822 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CHAF1BQ13112 559 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TOMM34Q15785 309 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZSWIM7Q19AV6 140 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 DCAF10Q5QP82 559 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 FNDC7Q5VTL7 733 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TTC23Q5W5X9 447 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF770Q6IQ21 691 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF613Q6PF04 617 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 KLHL17Q6TDP4 642 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PRICKLE2Q7Z3G6 844 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF440Q8IYI8 595 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CLEC1AQ8NC01 280 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PFN4Q8NHR9 129 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PIGXQ8TBF5 258 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TMEM239Q8WW34 195 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ACOT11Q8WXI4 607 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 NR4A3Q92570 626 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 RDH12Q96NR8 316 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 GPA33Q99795 319 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ANKRD60Q9BZ19 345 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 UCK2Q9BZX2 261 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 HPF1Q9NWY4 346 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 MED11Q9P086 117 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 AASSQ9UDR5 926 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 IL20RAQ9UHF4 553 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 POFUT2Q9Y2G5 429 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 YARS2Q9Y2Z4 477 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 GMPPBQ9Y5P6 360 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 DOCK10Q96BY6 2186 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 RP1L1Q8IWN7 2480 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 PIEZO2Q9H5I5 2752 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TP53I11O14683 189 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 NKX2-8O15522 239 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ADAP00813 363 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SERPINA7P05543 415 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 FBXO45P0C2W1 286 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SAGP10523 405 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 LIPCP11150 499 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 IFI30P13284 250 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 LCN1P31025 176 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ADARB1P78563 741 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 IL5RAQ01344 420 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 INPP5JQ15735 1006 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 COL28A1Q2UY09 1125 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CLEC12AQ5QGZ9 265 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ACER2Q5QJU3 275 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF468Q5VIY5 522 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 TMEM236Q5W0B7 351 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ULK3Q6PHR2 472 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 OPN5Q6U736 354 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 NUP54Q7Z3B4 507 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CHERPQ8IWX8 916 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 C8orf59Q8N0T1 100 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF786Q8N393 782 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 MARVELD2Q8N4S9 558 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 HGDQ93099 445 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 NACC2Q96BF6 587 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZNF524Q96C55 264 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 JSRP1Q96MG2 331 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 PRSS27Q9BQR3 290 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 FUZQ9BT04 418 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 B3GNT4Q9C0J1 378 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 LAT2Q9GZY6 243 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ATP13A2Q9NQ11 1180 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 RASSF1Q9NS23 344 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 C20orf141Q9NUB4 165 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 STMN3Q9NZ72 180 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PPP4R1LQ9P1A2 415 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 KLK13Q9UKR3 277 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 MGAT4BQ9UQ53 548 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 VDAC3Q9Y277 283 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 MED31Q9Y3C7 131 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SPTA1P02549 2419 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ARGFXA6NJG6 315 aa3.38□□□□□ -1.87
RTN4-208ENST00000404909 ELOA3DA6NLF2 546 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms