RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CDRT15Q96T59 188 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 RTN4RQ9BZR6 473 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 HHATLQ9HCP6 504 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SACM1LQ9NTJ5 587 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 DEPPQ9NTK1 212 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 FLRT3Q9NZU0 649 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 PRDM4Q9UKN5 801 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 USP22Q9UPT9 525 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 L3MBTL1Q9Y468 752 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 WDR45Q9Y484 360 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CHST2Q9Y4C5 530 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CENPVL1A0A0U1RR11 272 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 TMEM247A6NEH6 219 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 PRAMEF25A6NGN4 478 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 GSC2O15499 205 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 HS6ST1O60243 411 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 SLC19A2O60779 497 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 GLSO94925 669 aaPredicted RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 SNX4O95219 450 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 CRYABP02511 175 aaKnown RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 DBIP07108 87 aaKnown RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 GGT1P19440 569 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ATP6V1C1P21283 382 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 CNR1P21554 472 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ELAVL4P26378 380 aaKnown RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 MEOX1P50221 254 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 PER3P56645 1201 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 EEF1A1P68104 462 aaKnown RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 FGFBP1Q14512 234 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ZSWIM7Q19AV6 140 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 GPAT3Q53EU6 434 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 SLC25A25Q6KCM7 469 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 DHRS4L2Q6PKH6 230 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 OLIG3Q7RTU3 272 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 MISPQ8IVT2 679 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 DMRTC2Q8IXT2 367 aaPredicted RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 CMIPQ8IY22 773 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 RPRMLQ8N4K4 120 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 FADS6Q8N9I5 356 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ZNF527Q8NB42 609 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ZFP62Q8NB50 900 aaPredicted RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 TMEM178AQ8NBL3 297 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 CADM1Q9BY67 442 aaKnown RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 DEFB127Q9H1M4 99 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 MMADHCQ9H3L0 296 aaPredicted RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 MUC13Q9H3R2 512 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 GORASP2Q9H8Y8 452 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 MKLN1Q9UL63 735 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 ANGPT4Q9Y264 503 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 KLF13Q9Y2Y9 288 aaPredicted RBP8.36□□□□□ -1.07
VPS53-203ENST00000401468 DTNAQ9Y4J8 743 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 WIF1Q9Y5W5 379 aa8.36□□□□□ -1.07
VPS53-203ENST00000401468 SCO2A0A1W2PP80 73 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 CDHR4A6H8M9 788 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 LRRC3CA6NJW4 275 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 ETV2O00321 342 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 GYG2O15488 501 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 DNAJC8O75937 253 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 MFN2O95140 757 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 EPPINO95925 133 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 P04436 131 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 C8BP07358 591 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 PABPC4LP0CB38 370 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 ABOP16442 354 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 ZNF24P17028 368 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 ENDOUP21128 410 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 PRKAR1BP31321 381 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 KDELR2P33947 212 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 PGM1P36871 562 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 CA7P43166 264 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 DLX5P56178 289 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 HPCAP84074 193 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 MXRA7P84157 204 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 BNIP2Q12982 314 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 GPR68Q15743 365 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 CD226Q15762 336 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 RPS26P11Q5JNZ5 115 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 PDZK1Q5T2W1 519 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 INTS11Q5TA45 600 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 BICRALQ6AI39 1079 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 SHISA2Q6UWI4 295 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 CCDC121Q6ZUS5 278 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 GALNT10Q86SR1 603 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 PATL1Q86TB9 770 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 SIAH3Q8IW03 269 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 SULF2Q8IWU5 870 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 CHERPQ8IWX8 916 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 WDSUB1Q8N9V3 476 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 FAM13CQ8NE31 585 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 BHLHE22Q8NFJ8 381 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 TOR1AIP2Q8NFQ8 470 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 TNIP2Q8NFZ5 429 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 OR2M7Q8NG81 312 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 GPR137Q96N19 417 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 KCTD14Q9BQ13 255 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 FAM173AQ9BQD7 235 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 OSBPL11Q9BXB4 747 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 QRSL1Q9H0R6 528 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 UBQLN3Q9H347 655 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 EVA1AQ9H8M9 152 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms