RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TCEANCQ8N8B7 351 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 GALNT6Q8NCL4 622 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 OR4Q3Q8NH05 313 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 IPCEF1Q8WWN9 437 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 MR1Q95460 341 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 MUL1Q969V5 352 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 IL20RAQ9UHF4 553 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 LOXL2Q9Y4K0 774 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 SNX5Q9Y5X3 404 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 CCDC160A6NGH7 325 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 PCNX2A6NKB5 2137 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 INMTO95050 263 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 KLK3P07288 261 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 LCN1P31025 176 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 PCYT1AP49585 367 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 SMSP52788 366 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 PNLIPRP2P54317 469 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 CTBP2P56545 445 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 SLC26A5P58743 744 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 SLC27A4Q6P1M0 643 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 ULK3Q6PHR2 472 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 CASP12Q6UXS9 341 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TMPRSS11FQ6ZWK6 438 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 OR8J1Q8NGP2 316 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 WDR36Q8NI36 951 aaKnown RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TEX47Q8TBZ9 253 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 THAP3Q8WTV1 239 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TRUB1Q8WWH5 349 aaKnown RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TP53INP1Q96A56 240 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 C3orf49Q96BT1 292 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 NMD3Q96D46 503 aaKnown RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 BPIFA2Q96DR5 249 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 LPAR4Q99677 370 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TUBA1CQ9BQE3 449 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 COPS4Q9BT78 406 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 POLDIP3Q9BY77 421 aaKnown RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 ENKD1Q9H0I2 346 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 CCNB1IP1Q9NPC3 277 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TMEM9BQ9NQ34 198 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 EXOSC3Q9NQT5 275 aaKnown RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TOR4AQ9NXH8 423 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 DNAJC27Q9NZQ0 273 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 MED31Q9Y3C7 131 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 A0A1W2PNU3 283 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-202ENST00000372405 GNB5O14775 395 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF264O43296 627 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 MAN1A2O60476 641 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 ACVR2AP27037 513 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 SLC15A1P46059 708 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 GP2P55259 537 aaKnown RBP12.62□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF117Q03924 483 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 CDCP2Q5VXM1 449 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 SLC30A6Q6NXT4 461 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 MARCH3Q86UD3 253 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 CLVS1Q8IUQ0 354 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-202ENST00000372405 NUBPLQ8TB37 319 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 VMP1Q96GC9 406 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 MPP4Q96JB8 637 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 HS6ST2Q96MM7 605 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 TSSK6Q9BXA6 273 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 NAA50Q9GZZ1 169 aaKnown RBP12.62□□□□□ -0.39
PTPRF-202ENST00000372405 CLN6Q9NWW5 311 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 CDH10Q9Y6N8 788 aa12.62□□□□□ -0.39
PTPRF-202ENST00000372405 LOC102723996A0A087X1L8 192 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 TRBV11-1A0A0K0K1C0 115 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SH3D21A4FU49 640 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 UNC119BA6NIH7 251 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 C4orf47A7E2U8 309 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ALG1L2C9J202 215 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 TLX2O43763 284 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 FADS1O60427 444 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 NADKO95544 446 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 FADS2O95864 444 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 CDK1P06493 297 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 CYC1P08574 325 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 STSP08842 583 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 RBM34P42696 430 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 FHL1Q13642 323 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 NCF4Q15080 339 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 PCOLCEQ15113 449 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ISXQ2M1V0 245 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF440Q8IYI8 595 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 FAM26EQ8N5C1 309 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 CLDN22Q8N7P3 220 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 OR13C2Q8NGS9 318 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 OSTF1Q92882 214 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SAMD8Q96LT4 415 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ZBTB20Q9HC78 741 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 VCX3AQ9NNX9 186 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 PARD6AQ9NPB6 346 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ACOT13Q9NPJ3 140 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 TBC1D23Q9NUY8 699 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 RSL24D1Q9UHA3 163 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 GPN3Q9UHW5 284 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 NXT1Q9UKK6 140 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SDK2Q58EX2 2172 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 A0A087WUJ7 227 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 A0A1W2PQD3 144 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 OR6C70A6NIJ9 312 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 WWP2O00308 870 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms