RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 EBF1Q9UH73 591 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RAB26Q9ULW5 256 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 DNAJC15Q9Y5T4 150 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 PPRC1Q5VV67 1664 aaKnown RBP6.88□□□□□ -1.31
VPS13A-202ENST00000357409 IFNA4P05014 189 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 MAKP20794 623 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 CARD18P57730 90 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RBPJQ06330 500 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 PCGF3Q3KNV8 242 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TMEM71Q6P5X7 295 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 ADGRF3Q8IZF5 1079 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 GCNT2Q8N0V5 402 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 C7orf43Q8WVR3 580 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TMEM239Q8WW34 195 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 ARNT2Q9HBZ2 717 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 ACTR3BQ9P1U1 418 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 CRYM-AS1A6NIL9 109 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 DIRAS3O95661 229 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RAB3BP20337 219 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 ESCO2Q56NI9 601 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RBM45Q8IUH3 476 aaKnown RBP6.88□□□□□ -1.31
VPS13A-202ENST00000357409 NIPA2Q8N8Q9 360 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 OR1S1Q8NH92 325 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 FKBP10Q96AY3 582 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TAS2R16Q9NYV7 291 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 LOC105369274A0A096LPK9 316 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 CER1O95813 267 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 UGT2B7P16662 529 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RPE65Q16518 533 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 OR4N4Q8N0Y3 316 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TM9SF4Q92544 642 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 HRASLSQ9HDD0 168 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 RNF6Q9Y252 685 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TP53TG5Q9Y2B4 290 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 ZFAND5O76080 213 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 H2AFB2P0C5Z0 115 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 HOXD11P31277 338 aaPredicted RBP6.88□□□□□ -1.31
VPS13A-202ENST00000357409 IL2RGP31785 369 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 NOVA1P51513 510 aaKnown RBP6.88□□□□□ -1.31
VPS13A-202ENST00000357409 INHBCP55103 352 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TMEM217Q8N7C4 229 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 SYNPRQ8TBG9 265 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 DVL3Q92997 716 aaPredicted RBP6.88□□□□□ -1.31
VPS13A-202ENST00000357409 CCDC74AQ96AQ1 378 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 TECTBQ96PL2 329 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 MGLLQ99685 303 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 SLC22A4Q9H015 551 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 OLAHQ9NV23 265 aa6.88□□□□□ -1.31
VPS13A-202ENST00000357409 I6L893 689 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SPRY3O43610 288 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 C1orf105O95561 183 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 DEFA4P12838 97 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 RBM34P42696 430 aaKnown RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 CRISP1P54107 249 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 INCA1Q0VD86 236 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SPHARQ15513 63 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 UNQ6126/PRO20091Q6UXV3 157 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZSWIM9Q86XI8 627 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 AP1S3Q96PC3 154 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 UTP23Q9BRU9 249 aaKnown RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 MTHFD2LQ9H903 347 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 PADI1Q9ULC6 663 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 HTRA2O43464 458 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SUSD5O60279 629 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 IFNA5P01569 189 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 HNRNPH3P31942 346 aaKnown RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 CSNK1DP48730 415 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SCGB2A2Q13296 93 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 CDCA2Q69YH5 1023 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 RSPRY1Q96DX4 576 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 CDC6Q99741 560 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ACTRT3Q9BYD9 372 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 TCEAL2Q9H3H9 227 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 BANF2Q9H503 90 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 VWDEQ8N2E2 1590 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 H3BMQ9 156 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 DVL2O14641 736 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 STOMP27105 288 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 DBPQ10586 325 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 CST9LP1Q5W188 147 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 PGBD5Q8N414 524 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 OR5H2Q8NGV7 314 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 MPC1LP0DKB6 136 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 PDE7AQ13946 482 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 RGNQ15493 299 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 UNC5DQ6UXZ4 953 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 AAED1Q7RTV5 226 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZDHHC14Q8IZN3 488 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SUN5Q8TC36 379 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 TNFRSF13CQ96RJ3 184 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SAP130Q9H0E3 1048 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ST6GALNAC4Q9H4F1 302 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ELOVL3Q9HB03 270 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 PPP1R3CQ9UQK1 317 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZNF705FA8MVS1 300 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZNF705DP0CH99 300 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 ZNF705BP0CI00 300 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-202ENST00000357409 SLC30A8Q8IWU4 369 aa6.87□□□□□ -1.31
VPS13A-202ENST00000357409 OR5M8Q8NGP6 311 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms