RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 RPLP0P05388 317 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 NGFRP08138 427 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 CKMT1AP12532 417 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 IFI30P13284 250 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ENDOUP21128 410 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 NR4A1P22736 598 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 RGS6P49758 472 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 RNF144AP50876 292 aaPredicted RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 GPR143P51810 404 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 RAB40BQ12829 278 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 TCF15Q12870 199 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 EBPQ15125 230 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 SSX1Q16384 188 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 NNATQ16517 81 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 MOGQ16653 247 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 KLHL22Q53GT1 634 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 VWA2Q5GFL6 755 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ARMCX4Q5H9R4 360 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 C3orf38Q5JPI3 329 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 SLC30A6Q6NXT4 461 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ULK3Q6PHR2 472 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 SLC23A3Q6PIS1 610 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 KIRREL2Q6UWL6 708 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 LAPTM4BQ86VI4 370 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ATCAYQ86WG3 371 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 C9orf40Q8IXQ3 194 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 CYP4Z2PQ8N1L4 340 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 LNX2Q8N448 690 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 NANOGP1Q8N7R0 232 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 C17orf47Q8NEP4 570 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ANKK1Q8NFD2 765 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OR2T33Q8NG76 320 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OR52I1Q8NGK6 324 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 CEP76Q8TAP6 659 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 DYNC2LI1Q8TCX1 351 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 RPL3LQ92901 407 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 DAZLQ92904 295 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 BPIFA2Q96DR5 249 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 LGALS12Q96DT0 336 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 VMP1Q96GC9 406 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 SAMD8Q96LT4 415 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OPALINQ96PE5 141 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 LMF1Q96S06 567 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 YIPF2Q9BWQ6 316 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 JAM3Q9BX67 310 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 DPH1Q9BZG8 443 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OR8D2Q9GZM6 311 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OR52D1Q9H346 318 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 FN3KQ9H479 309 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 GAREM1Q9H706 876 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 ATP13A2Q9NQ11 1180 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 EXOSC3Q9NQT5 275 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 UBQLN4Q9NRR5 601 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 FAM86C1Q9NVL1 165 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 CTSFQ9UBX1 484 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 PPIEQ9UNP9 301 aaKnown RBP6.36□□□□□ -1.39
TRIM55-203ENST00000350034 SIGLEC7Q9Y286 467 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 OR10H1Q9Y4A9 318 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 CLCA3PQ9Y6N3 262 aa6.36□□□□□ -1.39
TRIM55-203ENST00000350034 A0A087WUJ7 227 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 A0A1W2PQD3 144 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 VSTM2BA6NLU5 285 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 SNTNA6NMZ2 147 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 A8MUA0 341 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 EFCAB9A8MZ26 197 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 NTN3O00634 580 aaPredicted RBP6.35□□□□□ -1.39
TRIM55-203ENST00000350034 ARHGAP33O14559 1287 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 ADAM10O14672 748 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 OIP5O43482 229 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 TSPAN2O60636 221 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 HCN1O60741 890 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 CSO75390 466 aaKnown RBP6.35□□□□□ -1.39
TRIM55-203ENST00000350034 RCBTB2O95199 551 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 UTS2O95399 124 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 TIAF1O95411 115 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 RAB36O95755 333 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 CFIP05156 583 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 SCG5P05408 212 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 HBQ1P09105 142 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 GADD45AP24522 165 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 HTR1FP30939 366 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 RFX3P48380 749 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 ENTPD1P49961 510 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 VBP1P61758 197 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 NCS1P62166 190 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 PSPHP78330 225 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 OCA2Q04671 838 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 MLLT11Q13015 90 aaPredicted RBP6.35□□□□□ -1.39
TRIM55-203ENST00000350034 SKP2Q13309 424 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 DCTN2Q13561 401 aaKnown RBP6.35□□□□□ -1.39
TRIM55-203ENST00000350034 SPHARQ15513 63 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 NSDHLQ15738 373 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 CD226Q15762 336 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 NDUFAF6Q330K2 333 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 NKAIN1Q4KMZ8 207 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 ALG10BQ5I7T1 473 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 CLEC12AQ5QGZ9 265 aa6.35□□□□□ -1.39
TRIM55-203ENST00000350034 ZNF362Q5T0B9 420 aaPredicted RBP6.35□□□□□ -1.39
TRIM55-203ENST00000350034 C1orf189Q5VU69 101 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms