RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GATAD2AQ86YP4 633 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 RNF113BQ8IZP6 322 aaKnown RBP17.9■□□□□ 0.46
COL9A3-201ENST00000343916 SMAP2Q8WU79 429 aaPredicted RBP17.9■□□□□ 0.46
COL9A3-201ENST00000343916 PTP4A1Q93096 173 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 PEX11GQ96HA9 241 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 TRPV5Q9NQA5 729 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 POMT2Q9UKY4 750 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 MED31Q9Y3C7 131 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 A8MV72 311 aaPredicted RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 J3QRE1 110 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 IDH3BO43837 385 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 MRPL3P09001 348 aaKnown RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 S1PR1P21453 382 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 NOS3P29474 1203 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 BMP8BP34820 402 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 FOXK2Q01167 660 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 PRPF38BQ5VTL8 546 aaKnown RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 BMP8AQ7Z5Y6 402 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 LNX2Q8N448 690 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 ARHGEF39Q8N4T4 335 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 CYB561A3Q8NBI2 242 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 ATP6V1C2Q8NEY4 427 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 NEIL3Q8TAT5 605 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 OR51V1Q9H2C8 321 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 SEMA6CQ9H3T2 930 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF221Q9UK13 617 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 FBXL4Q9UKA2 621 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 C10orf142B7Z368 130 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 GNB5O14775 395 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 NGFRP08138 427 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 RPS7P62081 194 aaKnown RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 FAM53BQ14153 422 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 MEPCEQ7L2J0 689 aaKnown RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 C19orf47Q8N9M1 422 aaKnown RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 SLC37A3Q8NCC5 494 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 OR52N1Q8NH53 320 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 TIMP4Q99727 224 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 LRRC61Q9BV99 259 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 TMEM27Q9HBJ8 222 aa17.89■□□□□ 0.45
COL9A3-201ENST00000343916 SIRT4Q9Y6E7 314 aaPredicted RBP17.89■□□□□ 0.45
COL9A3-201ENST00000343916 TMCC2O75069 709 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 AK1P00568 194 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 DRD5P21918 477 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 ATAD3CQ5T2N8 411 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 COL13A1Q5TAT6 717 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 GARNL3Q5VVW2 1013 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 THOC7Q6I9Y2 204 aaKnown RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 MCATQ8IVS2 390 aaKnown RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 GID4Q8IVV7 300 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 CDK20Q8IZL9 346 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 DEFB119Q8N690 84 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 ACBD7Q8N6N7 88 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 KISS1RQ969F8 398 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 ALG8Q9BVK2 526 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 FOLH1BQ9HBA9 442 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 DDX28Q9NUL7 540 aaKnown RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 N6AMT1Q9Y5N5 214 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 TNRC18O15417 2968 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 A0A0B4J2E0 115 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 A0A1B0GWA3 101 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 A0A1B0GX12 115 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 HLA-DPB1P04440 258 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 GYPBP06028 91 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 BTG2P78543 158 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 TMPRSS11FQ6ZWK6 438 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 NANOGNBQ7Z5D8 188 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 UBE2J2Q8N2K1 259 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 METTL27Q8N6F8 245 aaPredicted RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 OR10H4Q8NGA5 316 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 OR6F1Q8NGZ6 308 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 RIT1Q92963 219 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 TP53INP1Q96A56 240 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 RBM18Q96H35 190 aaKnown RBP17.88■□□□□ 0.45
COL9A3-201ENST00000343916 MALT1Q9UDY8 824 aa17.88■□□□□ 0.45
COL9A3-201ENST00000343916 FMO6PO60774 539 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 RCBTB2O95199 551 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 CSF3P09919 207 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 IL9P15248 144 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 HTR3AP46098 478 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 TMEM91Q6ZNR0 172 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 CHAC2Q8WUX2 184 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 SPACA7Q96KW9 195 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 NECTIN4Q96NY8 510 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 MAP3K3Q99759 626 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 TPSD1Q9BZJ3 242 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 NDEL1Q9GZM8 345 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 RGS13O14921 159 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 PPP1R3DO95685 299 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 ACAA2P42765 397 aaKnown RBP17.87■□□□□ 0.45
COL9A3-201ENST00000343916 ACSM1Q08AH1 577 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 STX4Q12846 297 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 NDUFAF6Q330K2 333 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF613Q6PF04 617 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF559Q9BR84 538 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 CMC2Q9NRP2 79 aa17.87■□□□□ 0.45
COL9A3-201ENST00000343916 DNAJB12Q9NXW2 375 aaKnown RBP17.87■□□□□ 0.45
COL9A3-201ENST00000343916 FAM86C2PA6NEL3 165 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PRR23D1E9PI22 279 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 TFECO14948 347 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 HRO43593 1189 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms