RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UNC119BA6NIH7 251 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 GNB5O14775 395 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF264O43296 627 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 TLX2O43763 284 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 MAN1A2O60476 641 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 MRPS14O60783 128 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 INMTO95050 263 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF806P0C7X5 589 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 LCN1P31025 176 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 SNAPC1Q16533 368 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 SLC30A6Q6NXT4 461 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 BCDIN3DQ7Z5W3 292 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 FANK1Q8TC84 345 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ISOC1Q96CN7 298 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 VMP1Q96GC9 406 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 Q96MT0 163 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 POLDIP3Q9BY77 421 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 MEPEQ9NQ76 525 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 FKBP14Q9NWM8 211 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 IL20Q9NYY1 176 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 NXT1Q9UKK6 140 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 TMEM5Q9Y2B1 443 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 CDH10Q9Y6N8 788 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 TRBV11-1A0A0K0K1C0 115 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF99A8MXY4 864 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 C9J4A7 227 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 RFPL3O75679 317 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 CDK1P06493 297 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 SAGP10523 405 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 C21orf33P30042 268 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 RBM34P42696 430 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 NRG3P56975 720 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 MVKQ03426 396 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 TMEM201Q5SNT2 666 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 CBLN3Q6UW01 205 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 TMEM205Q6UW68 189 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 FAM198BQ6UWH4 519 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 C16orf47Q6ZP98 133 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 STX19Q8N4C7 294 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 WDR36Q8NI36 951 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 RORBQ92753 470 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 LRFN5Q96NI6 719 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF426Q9BUY5 554 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 ACOT13Q9NPJ3 140 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 WARS2Q9UGM6 360 aaKnown RBP12.28□□□□□ -0.44
HMGB1-202ENST00000339872 LOXL2Q9Y4K0 774 aa12.28□□□□□ -0.44
HMGB1-202ENST00000339872 EXPH5Q8NEV8 1989 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 B4E171 279 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 CH25HO95992 272 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 NGFRP08138 427 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 STSP08842 583 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 TSPAN7P41732 249 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 PNLIPRP2P54317 469 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 MLLT10P55197 1068 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 CTBP2P56545 445 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 CLDN6P56747 220 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 ST3GAL4Q11206 333 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 TUBA3CQ13748 450 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 CLDN22Q8N7P3 220 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 GALNT6Q8NCL4 622 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 OR4Q3Q8NH05 313 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 SH3YL1Q96HL8 342 aaPredicted RBP12.27□□□□□ -0.44
HMGB1-202ENST00000339872 SAMD8Q96LT4 415 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 SLC38A2Q96QD8 506 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 PRRG3Q9BZD7 231 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 TBL1XR1Q9BZK7 514 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 RTN4RQ9BZR6 473 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 NAA50Q9GZZ1 169 aaKnown RBP12.27□□□□□ -0.44
HMGB1-202ENST00000339872 OR52D1Q9H346 318 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 TMEM9BQ9NQ34 198 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 EXOSC3Q9NQT5 275 aaKnown RBP12.27□□□□□ -0.44
HMGB1-202ENST00000339872 PPIEQ9UNP9 301 aaKnown RBP12.27□□□□□ -0.44
HMGB1-202ENST00000339872 B3GALT1Q9Y5Z6 326 aa12.27□□□□□ -0.44
HMGB1-202ENST00000339872 CYC1P08574 325 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 PAX7P23759 505 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 DCKP27707 260 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 ETV5P41161 510 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 GP2P55259 537 aaKnown RBP12.27□□□□□ -0.45
HMGB1-202ENST00000339872 SLC26A5P58743 744 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 SPEM2Q0P670 501 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 B3GNT6Q6ZMB0 384 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 TMPRSS11FQ6ZWK6 438 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 MARCH3Q86UD3 253 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 OR13C2Q8NGS9 318 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 DNAJA4Q8WW22 397 aaPredicted RBP12.27□□□□□ -0.45
HMGB1-202ENST00000339872 TP53INP1Q96A56 240 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 C3orf49Q96BT1 292 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 LRR1Q96L50 414 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 STRADBQ9C0K7 418 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 ZBTB20Q9HC78 741 aaPredicted RBP12.27□□□□□ -0.45
HMGB1-202ENST00000339872 GPR52Q9Y2T5 361 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 COMMD3-BMI1R4GMX3 469 aa12.27□□□□□ -0.45
HMGB1-202ENST00000339872 EFCAB10A6NFE3 127 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 EFCAB9A8MZ26 197 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 NDUFB5O43674 189 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 GMFGO60234 142 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 CBFA2T3O75081 653 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PSMB9P28065 219 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF117Q03924 483 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 CRYZQ08257 329 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms