RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 IGHV5-10-1A0A0J9YXX1 117 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 H0YAE9 185 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 RBMXL2O75526 392 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 GLO1Q04760 184 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 PPP1R8Q12972 351 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 ATP1A4Q13733 1029 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 EIF2B1Q14232 305 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 ARHGAP11BQ3KRB8 267 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 GFRALQ6UXV0 394 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CRIPAKQ8N1N5 446 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 MZB1Q8WU39 189 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 ACOT11Q8WXI4 607 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 DNASE2BQ8WZ79 361 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 SAMD8Q96LT4 415 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 ZNF300Q96RE9 604 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 CHCHD6Q9BRQ6 235 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 ULBP2Q9BZM5 246 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 NMNAT1Q9HAN9 279 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 DYNLRB1Q9NP97 96 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 LHX9Q9NQ69 397 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 FBXL4Q9UKA2 621 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 BTBD3Q9Y2F9 522 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 ZNF646O15015 1829 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 OPN1LWP04000 364 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 FCRL6Q6DN72 434 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 FAM131AQ6UXB0 335 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 GOT1L1Q8NHS2 421 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 B3GNT4Q9C0J1 378 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 P4HTMQ9NXG6 502 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CLEC4AQ9UMR7 237 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 GPC6Q9Y625 555 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 A0A1W2PRQ8 180 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 NAA10P41227 235 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 VBP1P61758 197 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 APOFQ13790 326 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 IL18Q14116 193 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 ZBED5Q49AG3 693 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 PGM2L1Q6PCE3 622 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 Q6ZSR9 355 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 MRPL21Q7Z2W9 205 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 OR5W2Q8NH69 310 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 HAVCR2Q8TDQ0 301 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 KCTD7Q96MP8 289 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CALHM2Q9HA72 323 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 PCOLCE2Q9UKZ9 415 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 A0A075B6Q4 140 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 PMS2P1A4D2B8 440 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 HPP00738 406 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 MTHFD2P13995 350 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TACR1P25103 407 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TGFBR2P37173 567 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 CLDN17P56750 224 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 PIN1Q13526 163 aaPredicted RBP9.41□□□□□ -0.9
USP54-201ENST00000339859 IDNKQ5T6J7 187 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 DDI2Q5TDH0 399 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SAXO2Q658L1 398 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 OVCH1Q7RTY7 1134 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 MCUBQ9NWR8 336 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SHROOM3Q8TF72 1996 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF587BE7ETH6 402 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 IL2RAP01589 272 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 GSTT2BP0CG30 244 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 RNF4P78317 190 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SIRPAP78324 504 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 NPRL3Q12980 569 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ECH1Q13011 328 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF766Q5HY98 468 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 C3orf33Q6P1S2 294 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 NIPAL3Q6P499 406 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 CBLL1Q75N03 491 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF627Q7L945 461 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 D2HGDHQ8N465 521 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZFP90Q8TF47 636 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 C15orf40Q8WUR7 153 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 KAT8Q9H7Z6 458 aaKnown RBP9.41□□□□□ -0.9
USP54-201ENST00000339859 CTSFQ9UBX1 484 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 A0A0A6YYD5 115 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 METTL21EPA6NDL7 271 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ENO4A6NNW6 628 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 C12orf71A8MTZ7 269 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 HLA-DPB1P04440 258 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TPTEP56180 551 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 CEACAM7Q14002 265 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 OR1C1Q15619 314 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 XKR7Q5GH72 579 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 GLT8D1Q68CQ7 371 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 GRINAQ7Z429 371 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ANKRD37Q7Z713 158 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 HS3ST5Q8IZT8 346 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TREX2Q9BQ50 279 aaPredicted RBP9.41□□□□□ -0.9
USP54-201ENST00000339859 MBD1Q9UIS9 605 aaPredicted RBP9.41□□□□□ -0.9
USP54-201ENST00000339859 TRGV8A0A0C4DH27 118 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TEX13CA0A0J9YWL9 993 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ANKRD30BLA7E2S9 258 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 B4E171 279 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SYT5O00445 386 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 FRS3O43559 492 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 DNAJB5O75953 348 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TNFRSF1BP20333 461 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TSPAN7P41732 249 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms