RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 OR4D11Q8NGI4 311 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 OR6T1Q8NGN1 323 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 HSH2DQ96JZ2 352 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 DEFB127Q9H1M4 99 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 MED17Q9NVC6 651 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 TAS2R10Q9NYW0 307 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 DKKL1Q9UK85 242 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 PGCP20142 388 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 ZNF41P51814 821 aaPredicted RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 CMPK2Q5EBM0 449 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 ENPP6Q6UWR7 440 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 YRDCQ86U90 279 aaKnown RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 RBM45Q8IUH3 476 aaKnown RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 VANGL1Q8TAA9 524 aaPredicted RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 FAR1Q8WVX9 515 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 EVA1AQ9H8M9 152 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 ACKR4Q9NPB9 350 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 SLC9A8Q9Y2E8 581 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 MRPS18CQ9Y3D5 142 aaKnown RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 A0A087WZY1 265 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 TPST2O60704 377 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 HK1P19367 917 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 TCEA1P23193 301 aaKnown RBP20.11■□□□□ 0.81
SDC3-202ENST00000339394 MST1P26927 711 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 IDH2P48735 452 aaKnown RBP20.11■□□□□ 0.81
SDC3-202ENST00000339394 QPRTQ15274 297 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 PLPPR5Q32ZL2 321 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 MTX3Q5HYI7 312 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 ZNF324BQ6AW86 544 aaPredicted RBP20.11■□□□□ 0.81
SDC3-202ENST00000339394 CARM1Q86X55 608 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 OR14L1PQ8NHC6 308 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 NR4A3Q92570 626 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 DTNBP1Q96EV8 351 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 PYURFQ96I23 114 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 LRGUKQ96M69 825 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 BARD1Q99728 777 aaKnown RBP20.11■□□□□ 0.81
SDC3-202ENST00000339394 PRR14Q9BWN1 585 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 ASF1BQ9NVP2 202 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 RPH3AQ9Y2J0 694 aaPredicted RBP20.11■□□□□ 0.81
SDC3-202ENST00000339394 V9GYQ6 96 aa20.11■□□□□ 0.81
SDC3-202ENST00000339394 TCRBV5S2A0A599 114 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 NPIPA5E9PKD4 350 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 FAAHO00519 579 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 UQCRBP14927 111 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 MLLT10P55197 1068 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 FOXK1P85037 733 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 NPTX1Q15818 432 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 WIPI1Q5MNZ9 446 aaPredicted RBP20.1■□□□□ 0.81
SDC3-202ENST00000339394 ZNF563Q8TA94 476 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 NPAS1Q99742 590 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 OR2B2Q9GZK3 357 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 NPIPA1Q9UND3 350 aa20.1■□□□□ 0.81
SDC3-202ENST00000339394 FAM47E-STBD1D6RA91 191 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 WISP1O95388 367 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 PRKCAP17252 672 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 HTR2AP28223 471 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 SESN3P58005 492 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 IFI44LQ53G44 452 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 GEMIN6Q8WXD5 167 aaKnown RBP20.09■□□□□ 0.81
SDC3-202ENST00000339394 ZBTB8AQ96BR9 441 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 TRIM15Q9C019 465 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 AGPAT4Q9NRZ5 378 aa20.09■□□□□ 0.81
SDC3-202ENST00000339394 SHISA8B8ZZ34 492 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 ETV2O00321 342 aaPredicted RBP20.08■□□□□ 0.81
SDC3-202ENST00000339394 COPZ1P61923 177 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 KCNC4Q03721 635 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 GLYR1Q49A26 553 aaPredicted RBP20.08■□□□□ 0.81
SDC3-202ENST00000339394 C1orf146Q5VVC0 180 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 RANBP3LQ86VV4 465 aaPredicted RBP20.08■□□□□ 0.81
SDC3-202ENST00000339394 OR5M1Q8NGP8 315 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 TMEM234Q8WY98 164 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 ST8SIA1Q92185 356 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 TESQ9UGI8 421 aaKnown RBP20.08■□□□□ 0.81
SDC3-202ENST00000339394 LIPGQ9Y5X9 500 aa20.08■□□□□ 0.81
SDC3-202ENST00000339394 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 AQP12BA6NM10 295 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 CIB2O75838 187 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 IGHG3P01860 377 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 NQO1P15559 274 aaKnown RBP20.08■□□□□ 0.8
SDC3-202ENST00000339394 SLC1A3P43003 542 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 FOXF1Q12946 379 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 TMEM44Q2T9K0 475 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 RAET1LQ5VY80 246 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 AQP12AQ8IXF9 295 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 CADM2Q8N3J6 435 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 LSMEM1Q8N8F7 131 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 POC1BQ8TC44 478 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 MCHR1Q99705 422 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 SLX1AQ9BQ83 275 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 ZNF559Q9BR84 538 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 AMBRA1Q9C0C7 1298 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 SLC6A15Q9H2J7 730 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 LDAHQ9H6V9 325 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 ACER3Q9NUN7 267 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 PRDM4Q9UKN5 801 aa20.08■□□□□ 0.8
SDC3-202ENST00000339394 FMO6PO60774 539 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 SEMA7AO75326 666 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 NTN1O95631 604 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 PRB1P04280 392 aa20.07■□□□□ 0.8
SDC3-202ENST00000339394 IFNW1P05000 195 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms