RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HS3ST3B1Q9Y662 390 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 OIP5O43482 229 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 XPNPEP2O43895 674 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 FADS1O60427 444 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 FOXD2O60548 495 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF354AO60765 605 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 PPM1BO75688 479 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 HTR1AP08908 422 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 NAGAP17050 411 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 ENDOUP21128 410 aaKnown RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 GIPRP48546 466 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 CTBP2P56545 445 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 SLC35A2P78381 396 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 SMN1Q16637 294 aaKnown RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 NADK2Q4G0N4 442 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 ALG10BQ5I7T1 473 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 HES3Q5TGS1 186 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 STPG1Q5TH74 334 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 BROXQ5VW32 411 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 FOXB2Q5VYV0 432 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 C16orf87Q6PH81 154 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 CBLN3Q6UW01 205 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 C16orf47Q6ZP98 133 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 SATL1Q86VE3 508 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 CLDN22Q8N7P3 220 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 GRHL3Q8TE85 626 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 DNAJA4Q8WW22 397 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 SGCDQ92629 289 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 IMMP1LQ96LU5 166 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 COL25A1Q9BXS0 654 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-202ENST00000338045 LAT2Q9GZY6 243 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 SLC25A19Q9HC21 320 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 PLCXD1Q9NUJ7 323 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 IL20Q9NYY1 176 aa14.17□□□□□ -0.14
LIMS1-202ENST00000338045 ADAM10O14672 748 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 RAB40ALP0C0E4 278 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 LINGO3P0C6S8 592 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 COX6A1P12074 109 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 EEF1B2P24534 225 aaKnown RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 GPR4P46093 362 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 EFR3AQ14156 821 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 TMPRSS11FQ6ZWK6 438 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 MRGPREQ86SM8 312 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 TRUB1Q8WWH5 349 aaKnown RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 CCNL2Q96S94 520 aaPredicted RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 PLA2G12AQ9BZM1 189 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 DSN1Q9H410 356 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 MEPEQ9NQ76 525 aaPredicted RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 C20orf141Q9NUB4 165 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 SCN3BQ9NY72 215 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 MYOTQ9UBF9 498 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 TMEM5Q9Y2B1 443 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 CARD8Q9Y2G2 431 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 TPRKBQ9Y3C4 175 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 MED31Q9Y3C7 131 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 HEATR5AQ86XA9 2040 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 SMIM31A0A1B0GVY4 71 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 GTPBP1O00178 669 aaKnown RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 CDC42EP2O14613 210 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 AHCYL1O43865 530 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 IGHEP01854 428 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 EVI2BP34910 448 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 FOLR3P41439 243 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 COPZ1P61923 177 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 SNRPGP62308 76 aaKnown RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF620Q6ZNG0 422 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 P3H2Q8IVL5 708 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 CADM2Q8N3J6 435 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 OR8D4Q8NGM9 314 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 PFN4Q8NHR9 129 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 RNF138Q8WVD3 245 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 EGLN3Q9H6Z9 239 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 ZBTB20Q9HC78 741 aaPredicted RBP14.16□□□□□ -0.14
LIMS1-202ENST00000338045 NDUFA13Q9P0J0 144 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 RPS6KB2Q9UBS0 482 aa14.16□□□□□ -0.14
LIMS1-202ENST00000338045 A0A087WUJ7 227 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 WWP2O00308 870 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 NDUFB5O43674 189 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 EIF4E2O60573 245 aaKnown RBP14.15□□□□□ -0.14
LIMS1-202ENST00000338045 SLC6A8P48029 635 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 SMSP52788 366 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 EFNB1P98172 346 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 GINS1Q14691 196 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 EXT1Q16394 746 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 PLAG1Q6DJT9 500 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 WBP2NLQ6ICG8 309 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 LYPD8Q6UX82 237 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 MARCH3Q86UD3 253 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 TEX47Q8TBZ9 253 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 THAP3Q8WTV1 239 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-202ENST00000338045 CT55Q8WUE5 264 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 HGDQ93099 445 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 C3orf49Q96BT1 292 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 BPIFA2Q96DR5 249 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 TBL1XR1Q9BZK7 514 aa14.15□□□□□ -0.14
LIMS1-202ENST00000338045 PTGES3LE9PB15 166 aa14.14□□□□□ -0.15
LIMS1-202ENST00000338045 M0R129 80 aa14.14□□□□□ -0.15
LIMS1-202ENST00000338045 SOCS6O14544 535 aa14.14□□□□□ -0.15
LIMS1-202ENST00000338045 MRPS14O60783 128 aaKnown RBP14.14□□□□□ -0.15
LIMS1-202ENST00000338045 IFI30P13284 250 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms