RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ECH1Q13011 328 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 BAMBIQ13145 260 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DUSP8Q13202 625 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 VEZF1Q14119 521 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GALNT3Q14435 633 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF141Q15928 474 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 KIF26BQ2KJY2 2108 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 C10orf128Q5T292 105 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FBXW9Q5XUX1 488 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IRGCQ6NXR0 463 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TTC27Q6P3X3 843 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GALNT18Q6P9A2 607 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LHFPL2Q6ZUX7 228 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 Q6ZWC4 215 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LRRC70Q7Z2Q7 622 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FAM124AQ86V42 546 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TREML1Q86YW5 311 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZDHHC21Q8IVQ6 265 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 WDR75Q8IWA0 830 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MUC15Q8N387 334 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 BPIFB2Q8N4F0 458 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SDR9C7Q8NEX9 313 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR5M3Q8NGP4 307 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR8U1Q8NH10 309 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR51Q1Q8NH59 317 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SLC7A13Q8TCU3 470 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 UTP15Q8TED0 518 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GRK7Q8WTQ7 553 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 WDR60Q8WVS4 1066 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LCN9Q8WX39 176 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF75CPQ92670 426 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RAB1CQ92928 201 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RNF185Q96GF1 192 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PLPPR2Q96GM1 343 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 VPS39Q96JC1 886 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MEGF10Q96KG7 1140 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SAMD8Q96LT4 415 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NSMCE3Q96MG7 304 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TSG101Q99816 390 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FERMT1Q9BQL6 677 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 INPP5KQ9BT40 448 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 BCL2L14Q9BZR8 327 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZMAT4Q9H898 229 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF702PQ9H963 129 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ACER3Q9NUN7 267 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SMPD4Q9NXE4 827 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 VNN3Q9NY84 501 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MCTS1Q9ULC4 181 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 WDR37Q9Y2I8 494 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 A0A0A6YYD5 115 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IGHV1-69DA0A0B4J2H0 117 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IGKV1-8A0A0C4DH67 115 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 A0A1W2PR48 441 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 C3orf70A6NLC5 250 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF716A6NP11 495 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 A8MTW9 85 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FAM229AH3BQW9 127 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 AKAP8O43823 692 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GLRA3O75311 464 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TIPRLO75663 272 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 POP7O75817 140 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TGM6O95932 706 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TBX18O95935 607 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 AGR2O95994 175 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IGHV1-69P01742 117 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NR4A1P22736 598 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CTNNA2P26232 953 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GRK3P35626 688 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CASP3P42574 277 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TTPAP49638 278 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR4D2P58180 307 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CLRN1P58418 232 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CSNK2A1P68400 391 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PRAMEP78395 509 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HMGCS1Q01581 520 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TNFRSF17Q02223 184 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GK3PQ14409 553 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 KIR3DS1Q14943 382 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 VMACQ2NL98 169 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF404Q494X3 552 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZC3H12AQ5D1E8 599 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FNBP1LQ5T0N5 605 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CPTPQ5TA50 214 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SCARA3Q6AZY7 606 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR52E8Q6IFG1 317 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR6B2Q6IFH4 312 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 C11orf63Q6NUN7 778 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 UGT3A1Q6NUS8 523 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FAM83HQ6ZRV2 1179 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 APTXQ7Z2E3 356 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SGPP2Q8IWX5 399 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DEFB119Q8N690 84 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LINC01555Q8NAE3 123 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZBTB8BQ8NAP8 495 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR52N2Q8NGI0 321 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 POC1BQ8TC44 478 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CHAC2Q8WUX2 184 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TFAP2BQ92481 460 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TMEM54Q969K7 222 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 UTP4Q969X6 686 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms