RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HPDLQ96IR7 371 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CNDP1Q96KN2 507 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 VPS35Q96QK1 796 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 KIR2DL4Q99706 377 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 GPA33Q99795 319 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 SLC30A2Q9BRI3 323 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 C19orf24Q9BVV8 132 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF416Q9BWM5 594 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 RAB33BQ9H082 229 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 GLT8D2Q9H1C3 349 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 SLC25A51Q9H1U9 297 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 COG4Q9H9E3 785 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 MIEF1Q9NQG6 463 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 RDH8Q9NYR8 311 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CYTH4Q9UIA0 394 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CRLS1Q9UJA2 301 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 MFHAS1Q9Y4C4 1052 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 NOS1P29475 1434 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 METP08581 1390 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 KCPQ6ZWJ8 1503 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PLCH1Q4KWH8 1693 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CTTNBP2Q8WZ74 1663 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PTPN23Q9H3S7 1636 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ABCA3Q99758 1704 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 IGLV8-61A0A075B6I0 122 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KLF18A0A0U1RQI7 1052 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 STX11O75558 287 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 IDH1O75874 414 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 NOL4O94818 638 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CD55P08174 381 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 EPB41P11171 864 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ANXA3P12429 323 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KLK2P20151 261 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ZP3P21754 424 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 IL2RGP31785 369 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ADRA1AP35348 466 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CYLC1P35663 651 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 RPL4P36578 427 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 RPL32P62910 135 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 BDH1Q02338 343 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 SNTB2Q13425 540 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 GPM6BQ13491 265 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KCNJ11Q14654 390 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 RFTN1Q14699 578 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KIAA0040Q15053 153 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 USH1GQ495M9 461 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 NADK2Q4G0N4 442 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 PAGE2BQ5JRK9 111 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF658Q5TYW1 1059 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF57Q68EA5 555 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CENPPQ6IPU0 288 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 UFSP1Q6NVU6 142 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 SCYL2Q6P3W7 929 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ANKRD37Q7Z713 158 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 LHFPL4Q7Z7J7 247 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 GRAMD2AQ8IUY3 354 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 GPR65Q8IYL9 337 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ZSCAN4Q8NAM6 433 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ADAMTS16Q8TE57 1224 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 IL1F10Q8WWZ1 152 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 C18orf25Q96B23 403 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 SDSLQ96GA7 329 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CNOT6LQ96LI5 555 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 MRPL13Q9BYD1 178 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 SLITRK2Q9H156 845 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 GORASP2Q9H8Y8 452 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 AGPAT5Q9NUQ2 364 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 B4GALT7Q9UBV7 327 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 APOBEC3BQ9UH17 382 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KLHL21Q9UJP4 597 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CLEC4EQ9ULY5 219 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 SNX6Q9UNH7 406 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CHMP2BQ9UQN3 213 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 L3MBTL1Q9Y468 752 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 FLVCR1Q9Y5Y0 555 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 KIF25-AS1Q9Y6Z4 181 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 CHD2O14647 1828 aaKnown RBP2.46□□□□□ -2.02
HMGB1-201ENST00000326004 ADGRB3O60242 1522 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 PLEKHG2Q9H7P9 1386 aa2.46□□□□□ -2.02
HMGB1-201ENST00000326004 PXDNLA1KZ92 1463 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 C1orf167Q5SNV9 1468 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 CLIP1P30622 1438 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 C10orf71Q711Q0 1435 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TOPAZ1Q8N9V7 1692 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 A0A1B0GUL7 405 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 FRG2CA6NGY1 282 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 ZSCAN5BA6NJL1 495 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 KLLNB2CW77 178 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 E9PLD3 99 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 UBXN8O00124 270 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 TNFSF11O14788 317 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 SERF1AO75920 110 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 OR4F21O95013 312 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 KRTAP1-4P0C5Y4 121 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 CALCBP10092 127 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 DRD5P21918 477 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 GLRA2P23416 452 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 PSMA2P25787 234 aa2.45□□□□□ -2.02
HMGB1-201ENST00000326004 PTBP1P26599 531 aaKnown RBP eCLIP2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms