RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZNF840PA6NDX5 716 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 PYCARD-AS1I3L0S3 204 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ZNF254O75437 659 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 AKR7A3O95154 331 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 RLN1P04808 185 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 HIST1H2ABP04908 130 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 RD3LP0DJH9 198 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 SPP1P10451 314 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 PPP3CBP16298 524 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 HLA-FP30511 346 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 HTR1FP30939 366 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 MAT1AQ00266 395 aaKnown RBP12.52□□□□□ -0.4
SKA3-201ENST00000298260 CDC73Q6P1J9 531 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ZNF600Q6ZNG1 722 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 HIST3H2AQ7L7L0 130 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ZNF433Q8N7K0 673 aaPredicted RBP12.52□□□□□ -0.4
SKA3-201ENST00000298260 TMEM185AQ8NFB2 350 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 PXT1Q8NFP0 134 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 OR51L1Q8NGJ5 315 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 THEM6Q8WUY1 208 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 SMPDL3AQ92484 453 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 HIST1H2ACQ93077 130 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 TMEM159Q96B96 161 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ALG14Q96F25 216 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ZNF75AQ96N20 296 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 BCL2L14Q9BZR8 327 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ACTR6Q9GZN1 396 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 MED9Q9NWA0 146 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 OPN4Q9UHM6 478 aa12.52□□□□□ -0.4
SKA3-201ENST00000298260 ZNF230Q9UIE0 474 aaPredicted RBP12.52□□□□□ -0.4
SKA3-201ENST00000298260 EXOGQ9Y2C4 368 aaKnown RBP12.52□□□□□ -0.4
SKA3-201ENST00000298260 ARID1AO14497 2285 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 IRGMA1A4Y4 181 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 PLPP1O14494 284 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 CREBL2O60519 120 aaPredicted RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 EIF3GO75821 320 aaKnown RBP eCLIP12.52□□□□□ -0.41
SKA3-201ENST00000298260 GIPP09681 153 aaPredicted RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 AKR1A1P14550 325 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 ACADLP28330 430 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 OMPP47874 163 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 FUT5Q11128 374 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 LASP1Q14847 261 aaKnown RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 PGGHGQ32M88 737 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 TP53I3Q53FA7 332 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 TPRG1Q6ZUI0 275 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 RNF180Q86T96 592 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 TMEM173Q86WV6 379 aaPredicted RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 VOPP1Q96AW1 172 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 PRRC1Q96M27 445 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 OR14A2Q96R54 314 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 PLEKHM1Q9Y4G2 1056 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 EYSQ5T1H1 3165 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 IGLV3-16A0A075B6K0 115 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 FEZF1A0PJY2 475 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 CDHR4A6H8M9 788 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 MEIS3P1A6NDR6 274 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 ADAM11O75078 769 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 OR5F1O95221 314 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 CKMP06732 381 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 SCRN3Q0VDG4 424 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 TSPAN31Q12999 210 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 NDUFA9Q16795 377 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 PLEKHS1Q5SXH7 462 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 KIAA1211LQ6NV74 962 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 HAGHLQ6PII5 290 aaPredicted RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 RTN4RL1Q86UN2 441 aaPredicted RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 MCATQ8IVS2 390 aaKnown RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 CMIPQ8IY22 773 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 MACROD1Q9BQ69 325 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 IFT27Q9BW83 186 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 DNTTIP1Q9H147 329 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 TRIM36Q9NQ86 728 aa12.52□□□□□ -0.41
SKA3-201ENST00000298260 ZCCHC3Q9NUD5 404 aaKnown RBP12.52□□□□□ -0.41
SKA3-201ENST00000298260 A0A1B0GUH1 482 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 OR6C68A6NDL8 312 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 DISC1C4P0D8 188 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 PSMD9O00233 223 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 KCNAB3O43448 404 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 SGCEO43556 437 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 THY1P04216 161 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 ASGR1P07306 291 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 C8orf89P0DMQ9 161 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CYBAP13498 195 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 HAAOP46952 286 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 RAP2BP61225 183 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 SMAD3P84022 425 aaKnown RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 DHODHQ02127 395 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 ACSM1Q08AH1 577 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 ATXN7L3Q14CW9 347 aaPredicted RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 SMAD2Q15796 467 aaKnown RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 OR4D10Q8NGI6 311 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 OR56A3Q8NH54 315 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 SLC22A8Q8TCC7 542 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 SOCS4Q8WXH5 440 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 ING5Q8WYH8 240 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 PEX11GQ96HA9 241 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 PGLYRP3Q96LB9 341 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 TSNAXQ99598 290 aaKnown RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 PDCD1LG2Q9BQ51 273 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 MFFQ9GZY8 342 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms