RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FAM192AQ9GZU8 254 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 GALNT9Q9HCQ5 603 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 TMEM9BQ9NQ34 198 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 COMMD3-BMI1R4GMX3 469 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 HSPE1-MOB4S4R3N1 261 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 FAM183AA6NL82 134 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 TRIM64CA6NLI5 447 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 ZNF883P0CG24 379 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 SLX4IPQ5VYV7 408 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 DEPDC4Q8N2C3 294 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 GHDCQ8N2G8 530 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 DGCR14Q96DF8 476 aaKnown RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 TBC1D23Q9NUY8 699 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 TUBA8Q9NY65 449 aaPredicted RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 SAGE2PA6NJ88 616 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 CBFA2T3O75081 653 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 STK17BO94768 372 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 GP1BAP07359 652 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 HBQ1P09105 142 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 UBL4AP11441 157 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 IFNGR2P38484 337 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 ST3GAL4Q11206 333 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 BTBD16Q32M84 506 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 THSD4Q6ZMP0 1018 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 SLCO6A1Q86UG4 719 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 IGFN1Q86VF2 1251 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 ART5Q96L15 291 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 BOD1L1Q8NFC6 3051 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 RGS10O43665 173 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 CDC40O60508 579 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP4-201ENST00000265560 KLF7O75840 302 aaPredicted RBP15.11■□□□□ 0.01
USP4-201ENST00000265560 UMODP07911 640 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 GSTT1P30711 240 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 FXYD6P3P58550 94 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 COPZ1P61923 177 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 SHFQ7M4L6 423 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 TIPARPQ7Z3E1 657 aaKnown RBP15.11■□□□□ 0.01
USP4-201ENST00000265560 DUSP19Q8WTR2 217 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 NACC2Q96BF6 587 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 LRR1Q96L50 414 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 TBL1XR1Q9BZK7 514 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 C14orf105Q9NVL8 296 aa15.11■□□□□ 0.01
USP4-201ENST00000265560 SMIM31A0A1B0GVY4 71 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 TMEM200CA6NKL6 621 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 NDUFB5O43674 189 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 JMJD7P0C870 316 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 PCMT1P22061 227 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 MST1P26927 711 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ZNF117Q03924 483 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 COX10Q12887 443 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 TOP3AQ13472 1001 aaPredicted RBP15.1■□□□□ 0.01
USP4-201ENST00000265560 TRA2AQ13595 282 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP4-201ENST00000265560 C3orf38Q5JPI3 329 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 FAM198BQ6UWH4 519 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 DCUN1D5Q9BTE7 237 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 FBXO8Q9NRD0 319 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 PSORS1C1Q9UIG5 152 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 MED31Q9Y3C7 131 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ZNF264O43296 627 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 CSO75390 466 aaKnown RBP15.1■□□□□ 0.01
USP4-201ENST00000265560 OR2J2O76002 312 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 PSMB9P28065 219 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 SLC9A3P48764 834 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 RPS6KA3P51812 740 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ISXQ2M1V0 245 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 SLC27A4Q6P1M0 643 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ZNF563Q8TA94 476 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 FAR1Q8WVX9 515 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ENO4A6NNW6 628 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 TSPAN2O60636 221 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 LSM3P62310 102 aaKnown RBP15.1■□□□□ 0.01
USP4-201ENST00000265560 SKP2Q13309 424 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ZBED5Q49AG3 693 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 DCAF12Q5T6F0 453 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 GRAMD2AQ8IUY3 354 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ZNF527Q8NB42 609 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 TNFRSF13CQ96RJ3 184 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 TRIM2Q9C040 744 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 MED20Q9H944 212 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 ENOPH1Q9UHY7 261 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 NPFFR2Q9Y5X5 522 aa15.1■□□□□ 0.01
USP4-201ENST00000265560 CLCA1A8K7I4 914 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 SOX30O94993 753 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 FPR3P25089 353 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 GP2P55259 537 aaKnown RBP15.09■□□□□ 0.01
USP4-201ENST00000265560 CDK5Q00535 292 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 INPP5JQ15735 1006 aaPredicted RBP15.09■□□□□ 0.01
USP4-201ENST00000265560 C12orf73Q69YU5 71 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ZNF613Q6PF04 617 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ZNF620Q6ZNG0 422 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ZNF550Q7Z398 422 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 STX19Q8N4C7 294 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ZNF566Q969W8 418 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 OR52D1Q9H346 318 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 CLN6Q9NWW5 311 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 MED13Q9UHV7 2174 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 MAP1BP46821 2468 aaKnown RBP15.09■□□□□ 0.01
USP4-201ENST00000265560 KLF4O43474 513 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 CHP2O43745 196 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 TCN2P20062 427 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms