RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PET117Q6UWS5 81 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 CATSPERDQ86XM0 798 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OR52H1Q8NGJ2 320 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ECHDC3Q96DC8 303 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 INTS14Q96SY0 518 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 CLDND1Q9NY35 253 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PURGQ9UJV8 347 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 RARRES3Q9UL19 164 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ARPC1BO15143 372 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 MTX2O75431 263 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 GIPRP48546 466 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 HLCSP50747 726 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 UBE2G1P62253 170 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 TIFABQ6ZNK6 161 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 C2CD4AQ8NCU7 369 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 HHIPL1Q96JK4 782 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 RASD1Q9Y272 281 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PCM1Q15154 2024 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 RGMBQ6NW40 437 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 Q6ZRG5 221 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MRPL10Q7Z7H8 261 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 KCNRGQ8N5I3 272 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 L3MBTL4Q8NA19 623 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 HSD17B14Q9BPX1 270 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 BABAM2Q9NXR7 383 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 C1GALT1C1LP0DN25 315 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 CAMK2BQ13554 666 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MICAQ29983 383 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 C1orf127Q8N9H9 656 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF582Q96NG8 517 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 CHRDL1Q9BU40 450 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 FBXL4Q9UKA2 621 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 KLRC4O43908 158 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 RGS11O94810 467 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 ARG2P78540 354 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MRIQ9BWK5 157 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF696Q9H7X3 374 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 ACKR4Q9NPB9 350 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 KCNK6Q9Y257 313 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM98Q9Y2Y6 226 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 INSL6Q9Y581 213 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 DLX3O60479 287 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 FBXO24O75426 580 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 RAB5AP20339 215 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 FLT3LGP49771 235 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 NXF5Q9H1B4 397 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC35A3Q9Y2D2 325 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MYF6P23409 242 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 OR7G3Q8NG95 312 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 CPNE4Q96A23 557 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 YIPF1Q9Y548 306 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 DCDC2BA2VCK2 349 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MMP12P39900 470 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 CSNK1A1P48729 337 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 NKX2-5P52952 324 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 MGAT3Q09327 533 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC6A19Q695T7 634 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 NLGN4XQ8N0W4 816 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 OR1J2Q8NGS2 313 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 KDM6BO15054 1643 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 CLDN1O95832 211 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 OSMP13725 252 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 SEMG2Q02383 582 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF805Q5CZA5 627 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 FAM217AQ8IXS0 508 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 RHEBL1Q8TAI7 183 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 PRR11Q96HE9 360 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 TM7SF3Q9NS93 570 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 RNF24Q9Y225 148 aa13.15□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM233B4DJY2 109 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 ELK1P19419 428 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 VIPR2P41587 438 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 CXADRP78310 365 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC14A2Q15849 920 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 SRRQ9GZT4 340 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 SACM1LQ9NTJ5 587 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 POLHQ9Y253 713 aa13.15□□□□□ -0.31
CCDC88A-201ENST00000263630 NRXN1Q9ULB1 1477 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 MYBPHLA2RUH7 354 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 METTL15A6NJ78 407 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 TAS2R38P59533 333 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 HSF1Q00613 529 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 PDE7AQ13946 482 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 STK11Q15831 433 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 MANEALQ5VSG8 457 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 NSUN3Q9H649 340 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 NOX3Q9HBY0 568 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 V9GY05 133 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 MCRIP1C9JLW8 97 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 LGALS4P56470 323 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 KDM1BQ8NB78 822 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 FAM163AQ96GL9 167 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ZDHHC11Q9H8X9 412 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 DECR2Q9NUI1 292 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 NKX1-2Q9UD57 310 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 LHX6Q9UPM6 363 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 FAM185AQ8N0U4 392 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF596Q8TC21 504 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 MS4A4EQ96PG1 132 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 LPAR4Q99677 370 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms