RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 BTN3A3O00478 584 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PEX12O00623 359 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PEBP1P30086 187 aaKnown RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 HTR1FP30939 366 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 DRD3P35462 400 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR12D2P58182 307 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FXYD6P3P58550 94 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 RPA4Q13156 261 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 MAB21L1Q13394 359 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FGL2Q14314 439 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 MLC1Q15049 377 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 IRF4Q15306 451 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 BHLHB9Q6PI77 547 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PARM1Q6UWI2 310 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ZNF836Q6ZNA1 936 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FRRS1Q6ZNA5 592 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 TRILQ7L0X0 811 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CEACAM19Q7Z692 300 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ACBD7Q8N6N7 88 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR4D9Q8NGE8 314 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR56A1Q8NGH5 318 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 GRHL3Q8TE85 626 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 AKAP1Q92667 903 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIG3-201ENST00000262327 KCNJ15Q99712 375 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 TIMP4Q99727 224 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 KXD1Q9BQD3 176 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 GON7Q9BXV9 100 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PCBD2Q9H0N5 130 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 WDR26Q9H7D7 661 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 LIN7BQ9HAP6 207 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 KLHL21Q9UJP4 597 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CES1P1Q9UKY3 287 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ZNF780BQ9Y6R6 833 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CACNA1IQ9P0X4 2223 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 RGS9O75916 674 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 CXCL3P19876 107 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FPR3P25089 353 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CCR6P51684 374 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 DUSP5Q16690 384 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ITPRIPL2Q3MIP1 535 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 TMEM52BQ4KMG9 183 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 DEFB134Q4QY38 66 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 TRMT12Q53H54 448 aaKnown RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 FIGNL1Q6PIW4 674 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PRSS45Q7RTY3 260 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 MRGPREQ86SM8 312 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR2L5Q8NG80 312 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR13C2Q8NGS9 318 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 BABAM2Q9NXR7 383 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 NKIRAS2Q9NYR9 191 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ZNF443Q9Y2A4 671 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 IRGMA1A4Y4 181 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 SLC9B1P1A6NJY1 282 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 PROM1O43490 865 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CHST10O43529 356 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 HLA-DQB1P01920 261 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ZNF888P0CJ79 500 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 SAGP10523 405 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 TEAD1P28347 426 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 SSTR2P30874 369 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 GJA4P35212 333 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 STAT5AP42229 794 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 NUDT18Q6ZVK8 323 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 MBOAT2Q6ZWT7 520 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR2L3Q8NG85 312 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 OR5W2Q8NH69 310 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FANK1Q8TC84 345 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 HSD17B8Q92506 261 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 FGF14Q92915 247 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 RFT1Q96AA3 541 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 C4orf36Q96KX1 117 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 GAS2L1Q99501 681 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 USB1Q9BQ65 265 aaKnown RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 IFT27Q9BW83 186 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 TEX12Q9BXU0 123 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ERVMER34-1Q9H9K5 563 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 CPNE7Q9UBL6 633 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ADAM29Q9UKF5 820 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 NCKAP1Q9Y2A7 1128 aa9.33□□□□□ -0.92
LIG3-201ENST00000262327 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.33□□□□□ -0.92
LIG3-201ENST00000262327 CEP290O15078 2479 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 NDUFA2O43678 99 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 LDB3O75112 727 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SLC43A1O75387 559 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 EML2O95834 649 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 IGHA1P01876 353 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SNRPBP14678 240 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 DRD5P21918 477 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 IGFBP4P22692 258 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 GDI1P31150 447 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 PYCR1P32322 319 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 TALDO1P37837 337 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ANXA11P50995 505 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 NTRK2Q16620 822 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ADAMTSL4Q6UY14 1074 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SSX6Q7RTT6 188 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 LINC00518Q8N0U6 118 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 TRMT10AQ8TBZ6 339 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 ZNF681Q96N22 645 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ACTRT3Q9BYD9 372 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms