RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PTBP1P26599 531 aaKnown RBP eCLIP13.35□□□□□ -0.27
SDC1-201ENST00000254351 CST5P28325 142 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 RECQLP46063 649 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 OMPP47874 163 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 RPS15P62841 145 aaKnown RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 DUSP2Q05923 314 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PRAMEF14Q5SWL7 426 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 STPG1Q5TH74 334 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PRAMEF13Q5VWM6 474 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 LRRN1Q6UXK5 716 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 FCRLAQ7L513 359 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 OR8K3Q8NH51 312 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 TIMP4Q99727 224 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 C6orf106Q9H6K1 298 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 LDAHQ9H6V9 325 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 ZNF334Q9HCZ1 680 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 C20orf141Q9NUB4 165 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 KIF25Q9UIL4 384 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 IDSB3KWA1 339 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 GOSR2O14653 212 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 KCNJ13O60928 360 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 F12P00748 615 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 INHAP05111 366 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SAGP10523 405 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 S100A11P31949 105 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SSR2P43308 183 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 CTAG1AP78358 180 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 AKIRIN2Q53H80 203 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 OR8S1Q8NH09 359 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SLC25A28Q96A46 364 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PEX11GQ96HA9 241 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 UBL7Q96S82 380 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 MICU1Q9BPX6 476 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SCPEP1Q9HB40 452 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PLSCR5A0PG75 271 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 KRBOX1C9JBD0 128 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 KIAA0355O15063 1070 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 FGBP02675 491 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 BMP8BP34820 402 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 SORDQ00796 357 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 KLF9Q13886 244 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 TRAM2Q15035 370 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 YOD1Q5VVQ6 348 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 DCAF12L2Q5VW00 463 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 KHDRBS2Q5VWX1 349 aaKnown RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 GDPD4Q6W3E5 623 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 BMP8AQ7Z5Y6 402 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 PDZD9Q8IXQ8 264 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 OR52N1Q8NH53 320 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 C1orf216Q8TAB5 229 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 OSTF1Q92882 214 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 VOPP1Q96AW1 172 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 ZMYND19Q96E35 227 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 SLC6A20Q9NP91 592 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 POT1Q9NUX5 634 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 MARK1Q9P0L2 795 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 USP36Q9P275 1121 aaKnown RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 PRKAG2Q9UGJ0 569 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 ZNF175Q9Y473 711 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 FAM171A2A8MVW0 826 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 FOXE1O00358 373 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 NRG2O14511 850 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 KCNAB3O43448 404 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 LATO43561 262 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 GALTP07902 379 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 NDUFV2P19404 249 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 IFNGR2P38484 337 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 MC2RQ01718 297 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 OR9A1PQ8NGU1 263 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 STK35Q8TDR2 534 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 ATOH1Q92858 354 aaPredicted RBP13.34□□□□□ -0.27
SDC1-201ENST00000254351 SYNPO2LQ9H987 977 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 NEUROD4Q9HD90 331 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 ZDHHC4Q9NPG8 344 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 ZMIZ1Q9ULJ6 1067 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 YIPF1Q9Y548 306 aa13.34□□□□□ -0.27
SDC1-201ENST00000254351 CENPVL1A0A0U1RR11 272 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 FLRT2O43155 660 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 MT-ND5P03915 603 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 THY1P04216 161 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 EPXP11678 715 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 TEAD1P28347 426 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 MAPK8P45983 427 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 PNLIPRP1P54315 467 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 H2BFSP57053 126 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 LTB4RQ15722 352 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 SLC25A30Q5SVS4 291 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 ASTLQ6HA08 431 aaPredicted RBP13.33□□□□□ -0.27
SDC1-201ENST00000254351 GSG1LQ6UXU4 331 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 NDUFAF7Q7L592 441 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 DNAAF1Q8NEP3 725 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 OR1S1Q8NH92 325 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 GLYATL1Q969I3 302 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 OR52D1Q9H346 318 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 ISYNA1Q9NPH2 558 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 FANCFQ9NPI8 374 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 MRPS18AQ9NVS2 196 aaKnown RBP13.33□□□□□ -0.27
SDC1-201ENST00000254351 STON1Q9Y6Q2 735 aa13.33□□□□□ -0.27
SDC1-201ENST00000254351 SCN10AQ9Y5Y9 1956 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms