RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CCSMST1Q4G0I0 132 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 HACD4Q5VWC8 232 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 SLC7A13Q8TCU3 470 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 RHCGQ9UBD6 479 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 PLEKHA6Q9Y2H5 1048 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 LRR1Q96L50 414 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ZNF768Q9H5H4 540 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 TMEM184BQ9Y519 407 aaPredicted RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 SOX14O95416 240 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 APLNRP35414 380 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 RPS26P11Q5JNZ5 115 aaPredicted RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 MAVSQ7Z434 540 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 STK35Q8TDR2 534 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 SENP5Q96HI0 755 aaPredicted RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 OR5B2Q96R09 309 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 CHRNA10Q9GZZ6 450 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 DNAJC27Q9NZQ0 273 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 SLC1A7O00341 560 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 PPP6CO00743 305 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 TP73O15350 636 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 TPTEP56180 551 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 MRPS10P82664 201 aaKnown RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 RHAGQ02094 409 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 ZP2Q05996 745 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 EIF2S3LQ2VIR3 472 aaKnown RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 NKAIN2Q5VXU1 208 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 LIX1LQ8IVB5 337 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 DCSTAMPQ9H295 470 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 RBM7Q9Y580 266 aaKnown RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 SUSD5O60279 629 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 PLET1Q6UQ28 207 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 VTCN1Q7Z7D3 282 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 POC5Q8NA72 575 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 OR52E2Q8NGJ4 325 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 ZNF417Q8TAU3 575 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 MRGPRX4Q96LA9 322 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 INTS14Q96SY0 518 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 MRPL39Q9NYK5 338 aaKnown RBP12.68□□□□□ -0.38
LDLR-201ENST00000252444 CCL7P80098 99 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 SGCAQ16586 387 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 C18orf63Q68DL7 685 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 C3orf33Q6P1S2 294 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 KLHL17Q6TDP4 642 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 MUS81Q96NY9 551 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 ENKD1Q9H0I2 346 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 OR10A2Q9H208 303 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 NPFFR2Q9Y5X5 522 aa12.68□□□□□ -0.38
LDLR-201ENST00000252444 DLGAP1O14490 977 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 IMPA2O14732 288 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ORC5O43913 435 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ANKRD34CP0C6C1 535 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ZNF182P17025 639 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 UBE2IP63279 158 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 CBX3Q13185 183 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 CNN3Q15417 329 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 AGAP7PQ5VUJ5 663 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 MED25Q71SY5 747 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 MEPCEQ7L2J0 689 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 LILRA3Q8N6C8 439 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 OR51G2Q8NGK0 314 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 STT3BQ8TCJ2 826 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 AGAP4Q96P64 663 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 SECISBP2Q96T21 854 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 FBXO9Q9UK97 447 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 A0A1W2PQF6 199 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 A0A1W2PR48 441 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PMS2P1A4D2B8 440 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 C11orf98E9PRG8 122 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 CSO75390 466 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 SNAP29O95721 258 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 LGI1O95970 557 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 WNT11O96014 354 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 FRKP42685 505 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 GPR4P46093 362 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 SPHARQ15513 63 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 MAL2Q969L2 176 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 WDR37Q9Y2I8 494 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 CMAHPQ9Y471 501 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PATJQ8NI35 1801 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ARPC4-TTLL3A0A0A6YYG9 625 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 IDSB3KWA1 339 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 M0R3H8 397 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 OR7A10O76100 309 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 DIRAS1O95057 198 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 TACR1P25103 407 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ZNF425Q6IV72 752 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 OR5D16Q8NGK9 328 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 OR51A7Q8NH64 312 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 C11orf24Q96F05 449 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 SIAEQ9HAT2 523 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 C5AR2Q9P296 337 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PAIP2BQ9ULR5 123 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 LCTP09848 1927 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 MN1Q10571 1320 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 TMED7-TICAM2A0A0A6YYA0 188 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 FABP12A6NFH5 140 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ENPP1P22413 925 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 DLSTP36957 453 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 UCNP55089 124 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 APOFQ13790 326 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms