RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 DCUN1D4Q92564 292 aa12.72□□□□□ -0.37
SF3A1-201ENST00000215793 TOE1Q96GM8 510 aaKnown RBP12.72□□□□□ -0.37
SF3A1-201ENST00000215793 NICN1Q9BSH3 213 aa12.72□□□□□ -0.37
SF3A1-201ENST00000215793 RPH3AQ9Y2J0 694 aaPredicted RBP12.72□□□□□ -0.37
SF3A1-201ENST00000215793 B3GALT1Q9Y5Z6 326 aa12.72□□□□□ -0.37
SF3A1-201ENST00000215793 GALR3O60755 368 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 CST5P28325 142 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 IDUAP35475 653 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 MGAT3Q09327 533 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF169Q14929 603 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF529Q6P280 563 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 TPRA1Q86W33 373 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 LRRC28Q86X40 367 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 OR9K2Q8NGE7 335 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 LHX3Q9UBR4 397 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF443Q9Y2A4 671 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 TP53TG5Q9Y2B4 290 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 MYH8P13535 1937 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ANKRD30BLA7E2S9 258 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 H0YIV9 168 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 UBFD1O14562 309 aaKnown RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ACP2P11117 423 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 MAOAP21397 527 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 HBA1P69905 142 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ADARB1P78563 741 aaKnown RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 NFATC4Q14934 902 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 NIPAL3Q6P499 406 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 FNDC9Q8TBE3 224 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 MYLIPQ8WY64 445 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 MFFQ9GZY8 342 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 ACAD8Q9UKU7 415 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 RHBDD3Q9Y3P4 386 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 LSM5Q9Y4Y9 91 aaKnown RBP12.71□□□□□ -0.37
SF3A1-201ENST00000215793 LRP6O75581 1613 aa12.71□□□□□ -0.37
SF3A1-201ENST00000215793 SLC16A7O60669 478 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 HLA-FP30511 346 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 TAZQ16635 292 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 TMEM201Q5SNT2 666 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 DESI1Q6ICB0 168 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 WDSUB1Q8N9V3 476 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ANKLE1Q8NAG6 615 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 SYNPRQ8TBG9 265 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ARL5BQ96KC2 179 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 C4orf36Q96KX1 117 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ANKRD12Q6UB98 2062 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 GAPDHSO14556 408 aaPredicted RBP12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ARPC1BO15143 372 aaKnown RBP12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ZFAND5O76080 213 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 EDN1P05305 212 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 DLX5P56178 289 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 NOXA1Q86UR1 476 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 RNF113BQ8IZP6 322 aaKnown RBP12.71□□□□□ -0.38
SF3A1-201ENST00000215793 ASB17Q8WXJ9 295 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 TOX2Q96NM4 488 aa12.71□□□□□ -0.38
SF3A1-201ENST00000215793 PTRH2Q9Y3E5 179 aaKnown RBP12.71□□□□□ -0.38
SF3A1-201ENST00000215793 DVL2O14641 736 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RAD1O60671 282 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 SEC14L2O76054 403 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 CD79AP11912 226 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 HOXC5Q00444 222 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 TSPAN31Q12999 210 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 OR1Q1Q15612 314 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 SYPL1Q16563 259 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 OPN5Q6U736 354 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 OR8J2Q8NGG1 315 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 MACROD1Q9BQ69 325 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 SLC25A18Q9H1K4 315 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RASD1Q9Y272 281 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 F8W036 122 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 B4GAT1O43505 415 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RFPL3O75679 317 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RAB40ALP0C0E4 278 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 DLSTP36957 453 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 NKX2-5P52952 324 aaPredicted RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 BLOC1S1P78537 153 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 MZT1Q08AG7 82 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF534Q76KX8 674 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 OR5K2Q8NHB8 316 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 FAM174AQ8TBP5 190 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RHBDD1Q8TEB9 315 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 RAB40AQ8WXH6 277 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 ST6GALNAC5Q9BVH7 336 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 LRFN1Q9P244 771 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 POLHQ9Y253 713 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 HS3ST2Q9Y278 367 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 CLDN24A6NM45 220 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 ALDOCP09972 364 aaKnown RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 BDKRB2P30411 391 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 PSMB10P40306 273 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 GK2Q14410 553 aaPredicted RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 EXOSC7Q15024 291 aaKnown RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 TLDC1Q6P9B6 456 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 PGM2L1Q6PCE3 622 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 COMMD7Q86VX2 200 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 SLC35F3Q8IY50 421 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 OR1S1Q8NH92 325 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 TSPAN10Q9H1Z9 355 aaPredicted RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 MED17Q9NVC6 651 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 KRBA1A5PL33 1030 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 HOXD9P28356 352 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms