RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TBX19O60806 448 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 GPANK1O95872 356 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 RPE65Q16518 533 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ADAMTSL4Q6UY14 1074 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 OR10G6Q8NH81 332 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TNFRSF13CQ96RJ3 184 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TEX101Q9BY14 249 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TCEAL2Q9H3H9 227 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 GMFGO60234 142 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 IGKV1D-16P01601 117 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 HTR1FP30939 366 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 EMDP50402 254 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 SRP54P61011 504 aaKnown RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 EEF1A1P68104 462 aaKnown RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 KRT33BQ14525 404 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 SFXN4Q6P4A7 337 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 CEACAM19Q7Z692 300 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 OR14C36Q8NHC7 312 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 PHF21AQ96BD5 680 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TEAD3Q99594 435 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TMEM168Q9H0V1 697 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 KCNK15Q9H427 330 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ENOPH1Q9UHY7 261 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 COPS3Q9UNS2 423 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 A0A1W2PQU0 124 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 LINC01553A4QN01 128 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 LRRC72A6NJI9 287 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 SIGLEC5O15389 551 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 MPC2O95563 127 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TMIGD3P0DMS9 266 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 CSNK2A2P19784 350 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 ZP1P60852 638 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 SIGLEC14Q08ET2 396 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 CST6Q15828 149 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 METAP1DQ6UB28 335 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 PEX5LQ8IYB4 626 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 GNPDA2Q8TDQ7 276 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ADAMTS15Q8TE58 950 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 GHSRQ92847 366 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 CCDC120Q96HB5 630 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 MED18Q9BUE0 208 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 HEXA-AS1Q9H8Q6 139 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 C2orf42Q9NWW7 574 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TNRC18O15417 2968 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 A0A0G2JPF8 293 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 HNRNPCL2B2RXH8 293 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 HNRNPCL3B7ZW38 293 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TGFBR3LH3BV60 316 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TNFRSF10AO00220 468 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 HNRNPCL4P0DMR1 293 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 NDUFV2P19404 249 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 FPR3P25089 353 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ST3GAL3Q11203 375 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 MLC1Q15049 377 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 FAAH2Q6GMR7 532 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 MBOAT2Q6ZWT7 520 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 AMIGO1Q86WK6 493 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 TMEM151BQ8IW70 566 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ZNF655Q8N720 491 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 IL17RCQ8NAC3 791 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 OR2T33Q8NG76 320 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 OR2T4Q8NH00 348 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 OR5W2Q8NH69 310 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 PIGXQ8TBF5 258 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 FGF14Q92915 247 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ZNF514Q96K75 400 aaPredicted RBP9.89□□□□□ -0.83
USP28-201ENST00000003302 OR14A2Q96R54 314 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 GSDMCQ9BYG8 508 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ADGRL4Q9HBW9 690 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 STON1Q9Y6Q2 735 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 FREM3P0C091 2139 aa9.89□□□□□ -0.83
USP28-201ENST00000003302 ICMTO60725 284 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 KAT7O95251 611 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 SELENOPP49908 381 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 VSX2P58304 361 aaPredicted RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 RPS11P62280 158 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP28-201ENST00000003302 FOXK2Q01167 660 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 OR1Q1Q15612 314 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 SDE2Q6IQ49 451 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 OR4K13Q8NH42 304 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 FLVCR1-AS1Q8TAF5 88 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 FANK1Q8TC84 345 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 NARFLQ9H6Q4 476 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 ING1Q9UK53 422 aaPredicted RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 ENTPD4Q9Y227 616 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 EXOGQ9Y2C4 368 aaKnown RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 EMC8O43402 210 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 GATBO75879 557 aaKnown RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 SAGP10523 405 aaPredicted RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 COL9A1P20849 921 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 ADH7P40394 386 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 PPP3R1P63098 170 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 POU4F3Q15319 338 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 ST3GAL2Q16842 350 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 PRPF38BQ5VTL8 546 aaKnown RBP9.88□□□□□ -0.83
USP28-201ENST00000003302 ZNF425Q6IV72 752 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 TRIM69Q86WT6 500 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 SIAH3Q8IW03 269 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 KLHL36Q8N4N3 616 aa9.88□□□□□ -0.83
USP28-201ENST00000003302 TRMT10AQ8TBZ6 339 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms