RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TNFRSF21O75509 655 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 CSTAP01040 98 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 LINGO3P0C6S8 592 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 NID1P14543 1247 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 ETS2P15036 469 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 PSMA4P25789 261 aaKnown RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 FKBP2P26885 142 aaKnown RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 LSP1P33241 339 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MAP2K6P52564 334 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 PAGE3Q5JUK9 113 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 COX20Q5RI15 118 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 RNF220Q5VTB9 566 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 RTL6Q6ICC9 239 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 ZNF585AQ6P3V2 769 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MRGPRGQ86SM5 289 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 DHDDSQ86SQ9 333 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 GRAMD2AQ8IUY3 354 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MSRB3Q8IXL7 192 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MEIOBQ8N635 442 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MBD3L2Q8NHZ7 208 aaPredicted RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 SLC38A5Q8WUX1 472 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 TMEM234Q8WY98 164 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 SH3GL1Q99961 368 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 TREX2Q9BQ50 279 aaPredicted RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 EVA1AQ9H8M9 152 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 CACYBPQ9HB71 228 aaKnown RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 VAPAQ9P0L0 249 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 KCNE5Q9UJ90 142 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 SH3BGRL2Q9UJC5 107 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 CAPN7Q9Y6W3 813 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 HSPB2A8KAH6 182 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 NTN1O95631 604 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 CHRM4P08173 479 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 RNF224P0DH78 156 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 ETFAP13804 333 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 PGCP20142 388 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 PGM1P36871 562 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 RAC1P63000 192 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 KCNJ10P78508 379 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 RBBP4Q09028 425 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 HSPB2Q16082 182 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 TRMT5Q32P41 509 aaKnown RBP16.52■□□□□ 0.24
CLN3-259ENST00000637551 GTDC1Q4AE62 458 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 SPATA21Q7Z572 469 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 SLC30A8Q8IWU4 369 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 MARVELD2Q8N4S9 558 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 BHLHE22Q8NFJ8 381 aaPredicted RBP16.52■□□□□ 0.24
CLN3-259ENST00000637551 OR5M9Q8NGP3 310 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 BBS10Q8TAM1 723 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 ANKRD27Q96NW4 1050 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 CGREF1Q99674 301 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 TM9SF2Q99805 663 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 CHST11Q9NPF2 352 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 IFT52Q9Y366 437 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 ZNF175Q9Y473 711 aa16.52■□□□□ 0.24
CLN3-259ENST00000637551 INTS1Q8N201 2190 aaKnown RBP16.52■□□□□ 0.24
CLN3-259ENST00000637551 GJE1A6NN92 205 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 CLDN14O95500 239 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 IL18BPO95998 194 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 CRHP06850 196 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 GLI4P10075 376 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 ARAFP10398 606 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 UQCRBP14927 111 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 ME2P23368 584 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 CEACAM8P31997 349 aaPredicted RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 RPS3AP61247 264 aaKnown RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 CHRNEQ04844 493 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 KLF10Q13118 480 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 CYLC2Q14093 348 aaPredicted RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 SYPL1Q16563 259 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 LIN52Q52LA3 116 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 RUNDC3AQ59EK9 446 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 DCST1Q5T197 706 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 ZNF787Q6DD87 383 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 ANKFN1Q8N957 763 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 PCYOX1LQ8NBM8 494 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 OR8J3Q8NGG0 315 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 PNPT1Q8TCS8 783 aaKnown RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 GPR119Q8TDV5 335 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 WDR60Q8WVS4 1066 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 WNT2BQ93097 391 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 AURKBQ96GD4 344 aaPredicted RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 CPPED1Q9BRF8 314 aaPredicted RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 CLCF1Q9UBD9 225 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 ZNF629Q9UEG4 869 aaPredicted RBP16.51■□□□□ 0.23
CLN3-259ENST00000637551 CAMK2AQ9UQM7 478 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 AP3M1Q9Y2T2 418 aa16.51■□□□□ 0.23
CLN3-259ENST00000637551 POLQO75417 2590 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 GMNCA6NCL1 334 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 H0Y3Z8 333 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 FCGR2AP12318 317 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 LARS2Q15031 903 aaKnown RBP16.5■□□□□ 0.23
CLN3-259ENST00000637551 MAPK11Q15759 364 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 SLC25A35Q3KQZ1 300 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 GCNT6Q5T4J0 391 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 CBLN3Q6UW01 205 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 ARSKQ6UWY0 536 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 ESPNLQ6ZVH7 1005 aa16.5■□□□□ 0.23
CLN3-259ENST00000637551 NET1Q7Z628 596 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms