RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRBV5-3A0A0A0MS03 114 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 CENPVL1A0A0U1RR11 272 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 AGAP5A6NIR3 686 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 OIP5O43482 229 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 IL2RAP01589 272 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 BCHEP06276 602 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 DBIP07108 87 aaKnown RBP18.7■□□□□ 0.58
CLN3-240ENST00000631023 LINGO3P0C6S8 592 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 UBTFL6P0CB48 400 aaPredicted RBP18.7■□□□□ 0.58
CLN3-240ENST00000631023 BMP2P12643 396 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 IL7RP16871 459 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 ME2P23368 584 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 ADH6P28332 368 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 TIMP3P35625 211 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 MAPRE2Q15555 327 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 NDUFAF6Q330K2 333 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 DLEU7Q6UYE1 221 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 DHDDSQ86SQ9 333 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 MSRB3Q8IXL7 192 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 CMIPQ8IY22 773 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 UBQLNLQ8IYU4 475 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 LILRB4Q8NHJ6 448 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 GPR119Q8TDV5 335 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 C10orf82Q8WW14 230 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 QRSL1Q9H0R6 528 aaKnown RBP18.7■□□□□ 0.58
CLN3-240ENST00000631023 RUBCNLQ9H714 662 aa18.7■□□□□ 0.58
CLN3-240ENST00000631023 PKDREJQ9NTG1 2253 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 A0A0G2JNJ9 132 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 A0A0G2JPF8 293 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 HSPB2A8KAH6 182 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 HNRNPCL2B2RXH8 293 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 HNRNPCL3B7ZW38 293 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 HNRNPCL1O60812 293 aaKnown RBP18.69■□□□□ 0.58
CLN3-240ENST00000631023 HNRNPCL4P0DMR1 293 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 PGM1P36871 562 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 KLF10Q13118 480 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 SKP2Q13309 424 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 HSPB2Q16082 182 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 CCDC71Q8IV32 467 aaPredicted RBP18.69■□□□□ 0.58
CLN3-240ENST00000631023 WDR60Q8WVS4 1066 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 SMPDL3BQ92485 455 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 RNF145Q96MT1 663 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 UCN2Q96RP3 112 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 TREX2Q9BQ50 279 aaPredicted RBP18.69■□□□□ 0.58
CLN3-240ENST00000631023 THUMPD3Q9BV44 507 aaKnown RBP18.69■□□□□ 0.58
CLN3-240ENST00000631023 NSRP1Q9H0G5 558 aaKnown RBP18.69■□□□□ 0.58
CLN3-240ENST00000631023 A4GALTQ9NPC4 353 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 Q9UFV3 132 aa18.69■□□□□ 0.58
CLN3-240ENST00000631023 CLCA1A8K7I4 914 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 SHISA8B8ZZ34 492 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 C5orf58C9J3I9 102 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 PRSS44E7EML9 344 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 SLC22A2O15244 555 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 CCDC22O60826 627 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 GPX2P18283 190 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 PGCP20142 388 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 HTR1EP28566 365 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 LSP1P33241 339 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 RPS3AP61247 264 aaKnown RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 RAC1P63000 192 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 NFYCQ13952 458 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 MAPK11Q15759 364 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 MMEL1Q495T6 779 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 PRAMEF8Q5VWM4 474 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 PRAMEF7Q5VXH5 474 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 SEM1Q6ZVN7 128 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 METTL25Q8N6Q8 603 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 TMEM234Q8WY98 164 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 TMEM19Q96HH6 336 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 MRGPRX4Q96LA9 322 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 TM9SF2Q99805 663 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 CHST11Q9NPF2 352 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 ZNF232Q9UNY5 417 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 SETXQ7Z333 2677 aaKnown RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 MBD3L4A6NDZ8 208 aaPredicted RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 MBD3L3A6NE82 208 aaPredicted RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 MBD3L5A6NJ08 208 aaPredicted RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 SEC14L5O43304 696 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 RPS4Y1P22090 263 aaKnown RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 CEACAM8P31997 349 aaPredicted RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 SEC24CP53992 1094 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 RUNDC3AQ59EK9 446 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 GCNT6Q5T4J0 391 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 SPATA21Q7Z572 469 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 CPLX4Q7Z7G2 160 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 HMGN2P46Q86SG4 172 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 ADGRE4PQ86SQ3 457 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 RETREG3Q86VR2 466 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 FAM71CQ8NEG0 241 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 OR52P1PQ8NH57 321 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 MBD3L2Q8NHZ7 208 aaPredicted RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 WNT2BQ93097 391 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 ANKRD27Q96NW4 1050 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 CGREF1Q99674 301 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 ELAC2Q9BQ52 826 aaKnown RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 KLHDC3Q9BQ90 382 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 EXOSC3Q9NQT5 275 aaKnown RBP18.68■□□□□ 0.58
CLN3-240ENST00000631023 CAPN7Q9Y6W3 813 aa18.68■□□□□ 0.58
CLN3-240ENST00000631023 GMNCA6NCL1 334 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 BBIP1A8MTZ0 92 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms