RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 NANSQ9NR45 359 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 NDRG4Q9ULP0 352 aaKnown RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 IGHV5-10-1A0A0J9YXX1 117 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 XKRYO14609 159 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 AIREO43918 545 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PPP1R3DO95685 299 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 ACVR2AP27037 513 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 ENTPD1P49961 510 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 DCAF12Q5T6F0 453 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 TSEN54Q7Z6J9 526 aaKnown RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 B3GNT7Q8NFL0 401 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 MVB12AQ96EY5 273 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 SPIN1Q9Y657 262 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 CCDC163A0A0D9SF12 145 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 FAM171A2A8MVW0 826 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 LRRN3E7EW58 273 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 BRINP1O60477 761 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 PCYT1AP49585 367 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 MVKQ03426 396 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 ATP1A4Q13733 1029 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 GTF2IRD2BQ6EKJ0 949 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 GTF2IRD2Q86UP8 949 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 COMTD1Q86VU5 262 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 D2HGDHQ8N465 521 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 OR5L2Q8NGL0 311 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 RAB2BQ8WUD1 216 aa14.52□□□□□ -0.08
CPSF1-213ENST00000620219 C4orf47A7E2U8 309 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 SYT5O00445 386 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 SLITRK5O94991 958 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 SMIM10L1P0DMW3 83 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 COX10Q12887 443 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 LSAMPQ13449 338 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 RAB11FIP2Q7L804 512 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 SGTBQ96EQ0 304 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 SMIM10Q96HG1 83 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 PPP4R1LQ9P1A2 415 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 RPH3AQ9Y2J0 694 aaPredicted RBP14.52□□□□□ -0.09
CPSF1-213ENST00000620219 OR5F1O95221 314 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 FOLR3P41439 243 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 TSTQ16762 297 aaKnown RBP14.52□□□□□ -0.09
CPSF1-213ENST00000620219 FAHD1Q6P587 224 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 CPOQ8IVL8 374 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 CCDC103Q8IW40 242 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 OMA1Q96E52 524 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 OR52D1Q9H346 318 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 A4GNTQ9UNA3 340 aa14.52□□□□□ -0.09
CPSF1-213ENST00000620219 BLACEA4D250 179 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 H3BSH0 61 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 HCN1O60741 890 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 AP1ARQ63HQ0 302 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 DESI1Q6ICB0 168 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 OR1F2PQ96R84 312 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TAPBPLQ9BX59 468 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 CSNK2BP67870 215 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 KMT5CQ86Y97 462 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 ZFP41Q8N8Y5 198 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 NR4A3Q92570 626 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 FAM86C1Q9NVL1 165 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 PCDHGA10Q9Y5H3 936 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 ZNF264O43296 627 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 ADORA3P0DMS8 318 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TGFBR1P36897 503 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 PSG6Q00889 435 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 DUSP8Q13202 625 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 CCDC71Q8IV32 467 aaPredicted RBP14.51□□□□□ -0.09
CPSF1-213ENST00000620219 MED20Q9H944 212 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 IKZF2Q9UKS7 526 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TMEM5Q9Y2B1 443 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TRAPPC6AO75865 159 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 ZNF3P17036 446 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 MAGEA8P43361 318 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TMED10P49755 219 aaKnown RBP14.51□□□□□ -0.09
CPSF1-213ENST00000620219 DCTN2Q13561 401 aaKnown RBP14.51□□□□□ -0.09
CPSF1-213ENST00000620219 OR52E2Q8NGJ4 325 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 SNRNP27Q8WVK2 155 aaKnown RBP14.51□□□□□ -0.09
CPSF1-213ENST00000620219 GGHQ92820 318 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 RNFT2Q96EX2 444 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 TNFRSF10DQ9UBN6 386 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 PADI1Q9ULC6 663 aa14.51□□□□□ -0.09
CPSF1-213ENST00000620219 A0A1B0GVG6 124 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 NAA10P41227 235 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-213ENST00000620219 GPR143P51810 404 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 WDR74Q6RFH5 385 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-213ENST00000620219 TMCO6Q96DC7 493 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 UCK1Q9HA47 277 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 SRA1Q9HD15 236 aaKnown RBP14.5□□□□□ -0.09
CPSF1-213ENST00000620219 A0A1W2PRQ8 180 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 DAPL1A0PJW8 107 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 SLC35F4A4IF30 521 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 CLCA1A8K7I4 914 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 PGCP20142 388 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 FRKP42685 505 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-213ENST00000620219 FUT5Q11128 374 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 ULK3Q6PHR2 472 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 OR4D9Q8NGE8 314 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 ZNF675Q8TD23 568 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 HS6ST2Q96MM7 605 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 EXO5Q9H790 373 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 NSG1A0A0A6YYJ2 146 aa14.5□□□□□ -0.09
CPSF1-213ENST00000620219 A6NL46 340 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms